“Dynamic Range” of Inferred Phenotypic HIV Drug Resistance Values in Clinical Practice

por Swenson, Luke C., Pollock, Graham, Wynhoven, Brian, Mo, Theresa, Dong, Winnie, Hogg, Robert S., Montaner, Julio S. G., Harrigan, P. Richard
Publicado 2011

Technical and Regulatory Shortcomings of the TaqMan Version 1 HIV Viral Load Assay

por Brumme, Chanson J., Swenson, Luke C., Wynhoven, Brian, Yip, Benita, Skinner, Stuart, Lima, Viviane Dias, Montaner, Julio S. G., Harrigan, P. Richard
Publicado 2012

Prolonged and Substantial Discordance in Prevalence of Raltegravir-Resistant HIV-1 in Plasma versus PBMC Samples Revealed by 454 “Deep” Sequencing

por Lee, Guinevere Q., Swenson, Luke C., Poon, Art F. Y., Martin, Jeffrey N., Hatano, Hiroyu, Deeks, Steven G., Harrigan, P. Richard
Publicado 2012

Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

por Poon, Art F. Y., Swenson, Luke C., Bunnik, Evelien M., Edo-Matas, Diana, Schuitemaker, Hanneke, van 't Wout, Angélique B., Harrigan, P. Richard
Publicado 2012

“Deep” Sequencing Accuracy and Reproducibility Using Roche/454 Technology for Inferring Co-Receptor Usage in HIV-1

por Knapp, David J. H. F., McGovern, Rachel A., Poon, Art F. Y., Zhong, Xiaoyin, Chan, Dennison, Swenson, Luke C., Dong, Winnie, Harrigan, P. Richard
Publicado 2014

Detection of Inferred CCR5- and CXCR4-Using HIV-1 Variants and Evolutionary Intermediates Using Ultra-Deep Pyrosequencing

por Bunnik, Evelien M., Swenson, Luke C., Edo-Matas, Diana, Huang, Wei, Dong, Winnie, Frantzell, Arne, Petropoulos, Christos J., Coakley, Eoin, Schuitemaker, Hanneke, Harrigan, P. Richard, van 't Wout, Angélique B.
Publicado 2011

Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing

por Liang, Richard H., Mo, Theresa, Dong, Winnie, Lee, Guinevere Q., Swenson, Luke C., McCloskey, Rosemary M., Woods, Conan K., Brumme, Chanson J., Ho, Cynthia K.Y., Schinkel, Janke, Joy, Jeffrey B., Harrigan, P. Richard, Poon, Art F.Y.
Publicado 2014

HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins

por Brumme, Zabrina L., John, Mina, Carlson, Jonathan M., Brumme, Chanson J., Chan, Dennison, Brockman, Mark A., Swenson, Luke C., Tao, Iris, Szeto, Sharon, Rosato, Pamela, Sela, Jennifer, Kadie, Carl M., Frahm, Nicole, Brander, Christian, Haas, David W., Riddler, Sharon A., Haubrich, Richard, Walker, Bruce D., Harrigan, P. Richard, Heckerman, David, Mallal, Simon
Publicado 2009