Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA

por Leuze, Michael R., Karpinets, Tatiana V., Syed, Mustafa H., Beliaev, Alexander S., Uberbacher, Edward C.
Publicado 2012

PUMA2—grid-based high-throughput analysis of genomes and metabolic pathways

por Maltsev, Natalia, Glass, Elizabeth, Sulakhe, Dinanath, Rodriguez, Alexis, Syed, Mustafa H., Bompada, Tanuja, Zhang, Yi, D'Souza, Mark
Publicado 2006

Sentra: a database of signal transduction proteins for comparative genome analysis

por D'Souza, Mark, Glass, Elizabeth M., Syed, Mustafa H., Zhang, Yi, Rodriguez, Alexis, Maltsev, Natalia, Galperin, Michael Y.
Publicado 2007

Shewregdb: Database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1

por Syed, Mustafa H, Karpinets, Tatiana V, Leuze, Michael R, Kora, Guruprasad H, Romine, Margaret R, Uberbacher, Edward C
Publicado 2009

Industrial Robustness: Understanding the Mechanism of Tolerance for the Populus Hydrolysate-Tolerant Mutant Strain of Clostridium thermocellum

por Linville, Jessica L., Rodriguez, Miguel, Land, Miriam, Syed, Mustafa H., Engle, Nancy L., Tschaplinski, Timothy J., Mielenz, Jonathan R., Cox, Chris D.
Publicado 2013

Baseline VDJ clonotype detection using a targeted sequencing NGS assay: allowing for subsequent MRD assessment

por Hultcrantz, Malin, Rustad, Even Holth, Yellapantula, Venkata, Arcila, Maria, Ho, Caleb, Syed, Mustafa H., Papaemmanuil, Elli, Zhang, Yanming, Maura, Francesco, Landgren, Ola
Publicado 2020

BESC knowledgebase public portal

por Syed, Mustafa H., Karpinets, Tatiana V., Parang, Morey, Leuze, Michael R., Park, Byung H., Hyatt, Doug, Brown, Steven D., Moulton, Steve, Galloway, Michael D., Uberbacher, Edward C.
Publicado 2012

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions

por Karpinets, Tatiana V., Romine, Margaret F., Schmoyer, Denise D., Kora, Guruprasad H., Syed, Mustafa H., Leuze, Michael R., Serres, Margrethe H., Park, Byung H., Samatova, Nagiza F., Uberbacher, Edward C.
Publicado 2010

Clonally-Related CD5+ CLL/SLL and CD10+ high grade B-cell lymphoma suggests common neoplastic progenitor with branched disease evolution, with therapeutic implications

por Kumar, Priyadarshini, Uppal, Manik, Xiao, Wenbin, Dogan, Ahmet, Roshal, Mikhail, Gao, Qi, Aypar, Umut, Zhang, Yanming, Arcila, Maria E., Moung, Christine, Yao, Jinjuan, Nafa, Khedoudja, Yu, Wayne, Syed, Mustafa H., Park, Jae, Kumar, Anita, Ho, Caleb
Publicado 2019

Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass

por Wilson, Charlotte M, Rodriguez, Miguel, Johnson, Courtney M, Martin, Stanton L, Chu, Tzu Ming, Wolfinger, Russ D, Hauser, Loren J, Land, Miriam L, Klingeman, Dawn M, Syed, Mustafa H, Ragauskas, Arthur J, Tschaplinski, Timothy J, Mielenz, Jonathan R, Brown, Steven D
Publicado 2013

KBase: The United States Department of Energy Systems Biology Knowledgebase

por Arkin, Adam P, Cottingham, Robert W, Henry, Christopher S, Harris, Nomi L, Stevens, Rick L, Maslov, Sergei, Dehal, Paramvir, Ware, Doreen, Perez, Fernando, Canon, Shane, Sneddon, Michael W, Henderson, Matthew L, Riehl, William J, Murphy-Olson, Dan, Chan, Stephen Y, Kamimura, Roy T, Kumari, Sunita, Drake, Meghan M, Brettin, Thomas S, Glass, Elizabeth M, Chivian, Dylan, Gunter, Dan, Weston, David J, Allen, Benjamin H, Baumohl, Jason, Best, Aaron A, Bowen, Ben, Brenner, Steven E, Bun, Christopher C, Chandonia, John-Marc, Chia, Jer-Ming, Colasanti, Ric, Conrad, Neal, Davis, James J, Davison, Brian H, DeJongh, Matthew, Devoid, Scott, Dietrich, Emily, Dubchak, Inna, Edirisinghe, Janaka N, Fang, Gang, Faria, José P, Frybarger, Paul M, Gerlach, Wolfgang, Gerstein, Mark, Greiner, Annette, Gurtowski, James, Haun, Holly L, He, Fei, Jain, Rashmi, Joachimiak, Marcin P, Keegan, Kevin P, Kondo, Shinnosuke, Kumar, Vivek, Land, Miriam L, Meyer, Folker, Mills, Marissa, Novichkov, Pavel S, Oh, Taeyun, Olsen, Gary J, Olson, Robert, Parrello, Bruce, Pasternak, Shiran, Pearson, Erik, Poon, Sarah S, Price, Gavin A, Ramakrishnan, Srividya, Ranjan, Priya, Ronald, Pamela C, Schatz, Michael C, Seaver, Samuel M D, Shukla, Maulik, Sutormin, Roman A, Syed, Mustafa H, Thomason, James, Tintle, Nathan L, Wang, Daifeng, Xia, Fangfang, Yoo, Hyunseung, Yoo, Shinjae, Yu, Dantong
Publicado 2018

Mutational Landscape of Metastatic Cancer Revealed from Prospective Clinical Sequencing of 10,000 Patients

por Zehir, Ahmet, Benayed, Ryma, Shah, Ronak H., Syed, Aijazuddin, Middha, Sumit, Kim, Hyunjae R., Srinivasan, Preethi, Gao, Jianjiong, Chakravarty, Debyani, Devlin, Sean M., Hellmann, Matthew D., Barron, David A., Schram, Alison M., Hameed, Meera, Dogan, Snjezana, Ross, Dara S., Hechtman, Jaclyn F., DeLair, Deborah F., Yao, JinJuan, Mandelker, Diana L., Cheng, Donavan T., Chandramohan, Raghu, Mohanty, Abhinita S., Ptashkin, Ryan N., Jayakumaran, Gowtham, Prasad, Meera, Syed, Mustafa H., Rema, Anoop Balakrishnan, Liu, Zhen Y., Nafa, Khedoudja, Borsu, Laetitia, Sadowska, Justyna, Casanova, Jacklyn, Bacares, Ruben, Kiecka, Iwona J., Razumova, Anna, Son, Julie B., Stewart, Lisa, Baldi, Tessara, Mullaney, Kerry A., Al-Ahmadie, Hikmat, Vakiani, Efsevia, Abeshouse, Adam A., Penson, Alexander V., Jonsson, Philip, Camacho, Niedzica, Chang, Matthew T., Won, Helen H., Gross, Benjamin E., Kundra, Ritika, Heins, Zachary J., Chen, Hsiao-Wei, Phillips, Sarah, Zhang, Hongxin, Wang, Jiaojiao, Ochoa, Angelica, Wills, Jonathan, Eubank, Michael, Thomas, Stacy B., Gardos, Stuart M., Reales, Dalicia N., Galle, Jesse, Durany, Robert, Cambria, Roy, Abida, Wassim, Cercek, Andrea, Feldman, Darren R., Gounder, Mrinal M., Hakimi, A. Ari, Harding, James J., Iyer, Gopa, Janjigian, Yelena Y., Jordan, Emmet J., Kelly, Ciara M., Lowery, Maeve A., Morris, Luc G.T., Omuro, Antonio M., Raj, Nitya, Razavi, Pedram, Shoushtari, Alexander N., Shukla, Neerav, Soumerai, Tara E., Varghese, Anna M., Yaeger, Rona, Coleman, Jonathan, Bochner, Bernard, Riely, Gregory J., Saltz, Leonard B., Scher, Howard I., Sabbatini, Paul J., Robson, Mark E., Klimstra, David S., Taylor, Barry S., Baselga, Jose, Schultz, Nikolaus, Hyman, David M., Arcila, Maria E., Solit, David B., Ladanyi, Marc, Berger, Michael F.
Publicado 2017