Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter

por Ito, Yosuke, Terao, Yasuhisa, Noma, Shohei, Tagami, Michihira, Yoshida, Emiko, Hayashizaki, Yoshihide, Itoh, Masayoshi, Kawaji, Hideya
Publicado 2021

Publisher Correction: Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter

por Ito, Yosuke, Terao, Yasuhisa, Noma, Shohei, Tagami, Michihira, Yoshida, Emiko, Hayashizaki, Yoshihide, Itoh, Masayoshi, Kawaji, Hideya
Publicado 2021

Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation

por Kubosaki, Atsutaka, Tomaru, Yasuhiro, Tagami, Michihira, Arner, Erik, Miura, Hisashi, Suzuki, Takahiro, Suzuki, Masanori, Suzuki, Harukazu, Hayashizaki, Yoshihide
Publicado 2009

Eprobe-mediated screening system for somatic mutations in the KRAS locus

por ATSUMI, JUN, HANAMI, TAKESHI, ENOKIDA, YASUAKI, OGAWA, HIROOMI, DELOBEL, DIANE, MITANI, YASUMASA, KIMURA, YASUMASA, SOMA, TAKAHIRO, TAGAMI, MICHIHIRA, TAKASE, YOSHIAKI, ICHIHARA, TATSUO, TAKEYOSHI, IZUMI, USUI, KENGO, HAYASHIZAKI, YOSHIHIDE, SHIMIZU, KIMIHIRO
Publicado 2015

A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

por Castaño-Sánchez, Cecilia, Fuji, Kanako, Ozaki, Akiyuki, Hasegawa, Osamu, Sakamoto, Takashi, Morishima, Kagayaki, Nakayama, Ichiro, Fujiwara, Atsushi, Masaoka, Tetsuji, Okamoto, Hiroyuki, Hayashida, Kengo, Tagami, Michihira, Kawai, Jun, Hayashizaki, Yoshihide, Okamoto, Nobuaki
Publicado 2010

The genome sequence of Streptomyces rochei 7434AN4, which carries a linear chromosome and three characteristic linear plasmids

por Nindita, Yosi, Cao, Zhisheng, Fauzi, Amirudin Akhmad, Teshima, Aiko, Misaki, Yuya, Muslimin, Rukman, Yang, Yingjie, Shiwa, Yuh, Yoshikawa, Hirofumi, Tagami, Michihira, Lezhava, Alexander, Ishikawa, Jun, Kuroda, Makoto, Sekizuka, Tsuyoshi, Inada, Kuninobu, Kinashi, Haruyasu, Arakawa, Kenji
Publicado 2019

The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background

por Ducoli, Luca, Agrawal, Saumya, Hon, Chung-Chau, Ramilowski, Jordan A., Sibler, Eliane, Tagami, Michihira, Itoh, Masayoshi, Kondo, Naoto, Abugessaisa, Imad, Hasegawa, Akira, Kasukawa, Takeya, Suzuki, Harukazu, Carninci, Piero, Shin, Jay W., de Hoon, Michiel J. L., Detmar, Michael
Publicado 2021

Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach

por Nakamura, Shota, Yang, Cheng-Song, Sakon, Naomi, Ueda, Mayo, Tougan, Takahiro, Yamashita, Akifumi, Goto, Naohisa, Takahashi, Kazuo, Yasunaga, Teruo, Ikuta, Kazuyoshi, Mizutani, Tetsuya, Okamoto, Yoshiko, Tagami, Michihira, Morita, Ryoji, Maeda, Norihiro, Kawai, Jun, Hayashizaki, Yoshihide, Nagai, Yoshiyuki, Horii, Toshihiro, Iida, Tetsuya, Nakaya, Takaaki
Publicado 2009

Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

por de Hoon, Michiel, Bonetti, Alessandro, Plessy, Charles, Ando, Yoshinari, Hon, Chung-Chau, Ishizu, Yuri, Itoh, Masayoshi, Kato, Sachi, Lin, Dongyan, Maekawa, Sho, Murata, Mitsuyoshi, Nishiyori, Hiromi, Shin, Jay W., Stolte, Jens, Suzuki, Ana Maria, Tagami, Michihira, Takahashi, Hazuki, Thongjuea, Supat, Forrest, Alistair R.R., Hayashizaki, Yoshihide, Kere, Juha, Carninci, Piero
Publicado 2022

High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance

por Yoshida, Yuki, Shaikhutdinov, Nurislam, Kozlova, Olga, Itoh, Masayoshi, Tagami, Michihira, Murata, Mitsuyoshi, Nishiyori-Sueki, Hiromi, Kojima-Ishiyama, Miki, Noma, Shohei, Cherkasov, Alexander, Gazizova, Guzel, Nasibullina, Aigul, Deviatiiarov, Ruslan, Shagimardanova, Elena, Ryabova, Alina, Yamaguchi, Katsushi, Bino, Takahiro, Shigenobu, Shuji, Tokumoto, Shoko, Miyata, Yugo, Cornette, Richard, Yamada, Takahiro G, Funahashi, Akira, Tomita, Masaru, Gusev, Oleg, Kikawada, Takahiro
Publicado 2022

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

por Grapotte, Mathys, Saraswat, Manu, Bessière, Chloé, Menichelli, Christophe, Ramilowski, Jordan A., Severin, Jessica, Hayashizaki, Yoshihide, Itoh, Masayoshi, Tagami, Michihira, Murata, Mitsuyoshi, Kojima-Ishiyama, Miki, Noma, Shohei, Noguchi, Shuhei, Kasukawa, Takeya, Hasegawa, Akira, Suzuki, Harukazu, Nishiyori-Sueki, Hiromi, Frith, Martin C., Chatelain, Clément, Carninci, Piero, de Hoon, Michiel J. L., Wasserman, Wyeth W., Bréhélin, Laurent, Lecellier, Charles-Henri
Publicado 2021

Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

por Grapotte, Mathys, Saraswat, Manu, Bessière, Chloé, Menichelli, Christophe, Ramilowski, Jordan A., Severin, Jessica, Hayashizaki, Yoshihide, Itoh, Masayoshi, Tagami, Michihira, Murata, Mitsuyoshi, Kojima-Ishiyama, Miki, Noma, Shohei, Noguchi, Shuhei, Kasukawa, Takeya, Hasegawa, Akira, Suzuki, Harukazu, Nishiyori-Sueki, Hiromi, Frith, Martin C., Chatelain, Clément, Carninci, Piero, de Hoon, Michiel J. L., Wasserman, Wyeth W., Bréhélin, Laurent, Lecellier, Charles-Henri
Publicado 2022

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

por Abugessaisa, Imad, Ramilowski, Jordan A, Lizio, Marina, Severin, Jesicca, Hasegawa, Akira, Harshbarger, Jayson, Kondo, Atsushi, Noguchi, Shuhei, Yip, Chi Wai, Ooi, Jasmine Li Ching, Tagami, Michihira, Hori, Fumi, Agrawal, Saumya, Hon, Chung Chau, Cardon, Melissa, Ikeda, Shuya, Ono, Hiromasa, Bono, Hidemasa, Kato, Masaki, Hashimoto, Kosuke, Bonetti, Alessandro, Kato, Masaki, Kobayashi, Norio, Shin, Jay, de Hoon, Michiel, Hayashizaki, Yoshihide, Carninci, Piero, Kawaji, Hideya, Kasukawa, Takeya
Publicado 2020

Gene Organization in Rice Revealed by Full-Length cDNA Mapping and Gene Expression Analysis through Microarray

por Satoh, Kouji, Doi, Koji, Nagata, Toshifumi, Kishimoto, Naoki, Suzuki, Kohji, Otomo, Yasuhiro, Kawai, Jun, Nakamura, Mari, Hirozane-Kishikawa, Tomoko, Kanagawa, Saeko, Arakawa, Takahiro, Takahashi-Iida, Juri, Murata, Mitsuyoshi, Ninomiya, Noriko, Sasaki, Daisuke, Fukuda, Shiro, Tagami, Michihira, Yamagata, Harumi, Kurita, Kanako, Kamiya, Kozue, Yamamoto, Mayu, Kikuta, Ari, Bito, Takahito, Fujitsuka, Nahoko, Ito, Kazue, Kanamori, Hiroyuki, Choi, Il-Ryong, Nagamura, Yoshiaki, Matsumoto, Takashi, Murakami, Kazuo, Matsubara, Ken-ichi, Carninci, Piero, Hayashizaki, Yoshihide, Kikuchi, Shoshi
Publicado 2007

Functional annotation of human long noncoding RNAs via molecular phenotyping

por Ramilowski, Jordan A., Yip, Chi Wai, Agrawal, Saumya, Chang, Jen-Chien, Ciani, Yari, Kulakovskiy, Ivan V., Mendez, Mickaël, Ooi, Jasmine Li Ching, Ouyang, John F., Parkinson, Nick, Petri, Andreas, Roos, Leonie, Severin, Jessica, Yasuzawa, Kayoko, Abugessaisa, Imad, Akalin, Altuna, Antonov, Ivan V., Arner, Erik, Bonetti, Alessandro, Bono, Hidemasa, Borsari, Beatrice, Brombacher, Frank, Cameron, Christopher J.F., Cannistraci, Carlo Vittorio, Cardenas, Ryan, Cardon, Melissa, Chang, Howard, Dostie, Josée, Ducoli, Luca, Favorov, Alexander, Fort, Alexandre, Garrido, Diego, Gil, Noa, Gimenez, Juliette, Guler, Reto, Handoko, Lusy, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Kosuke, Hayatsu, Norihito, Heutink, Peter, Hirose, Tetsuro, Imada, Eddie L., Itoh, Masayoshi, Kaczkowski, Bogumil, Kanhere, Aditi, Kawabata, Emily, Kawaji, Hideya, Kawashima, Tsugumi, Kelly, S. Thomas, Kojima, Miki, Kondo, Naoto, Koseki, Haruhiko, Kouno, Tsukasa, Kratz, Anton, Kurowska-Stolarska, Mariola, Kwon, Andrew Tae Jun, Leek, Jeffrey, Lennartsson, Andreas, Lizio, Marina, López-Redondo, Fernando, Luginbühl, Joachim, Maeda, Shiori, Makeev, Vsevolod J., Marchionni, Luigi, Medvedeva, Yulia A., Minoda, Aki, Müller, Ferenc, Muñoz-Aguirre, Manuel, Murata, Mitsuyoshi, Nishiyori, Hiromi, Nitta, Kazuhiro R., Noguchi, Shuhei, Noro, Yukihiko, Nurtdinov, Ramil, Okazaki, Yasushi, Orlando, Valerio, Paquette, Denis, Parr, Callum J.C., Rackham, Owen J.L., Rizzu, Patrizia, Sánchez Martinez, Diego Fernando, Sandelin, Albin, Sanjana, Pillay, Semple, Colin A.M., Shibayama, Youtaro, Sivaraman, Divya M., Suzuki, Takahiro, Szumowski, Suzannah C., Tagami, Michihira, Taylor, Martin S., Terao, Chikashi, Thodberg, Malte, Thongjuea, Supat, Tripathi, Vidisha, Ulitsky, Igor, Verardo, Roberto, Vorontsov, Ilya E., Yamamoto, Chinatsu, Young, Robert S., Baillie, J. Kenneth, Forrest, Alistair R.R., Guigó, Roderic, Hoffman, Michael M., Hon, Chung Chau, Kasukawa, Takeya, Kauppinen, Sakari, Kere, Juha, Lenhard, Boris, Schneider, Claudio, Suzuki, Harukazu, Yagi, Ken, de Hoon, Michiel J.L., Shin, Jay W., Carninci, Piero
Publicado 2020

FANTOM5 CAGE profiles of human and mouse samples

por Noguchi, Shuhei, Arakawa, Takahiro, Fukuda, Shiro, Furuno, Masaaki, Hasegawa, Akira, Hori, Fumi, Ishikawa-Kato, Sachi, Kaida, Kaoru, Kaiho, Ai, Kanamori-Katayama, Mutsumi, Kawashima, Tsugumi, Kojima, Miki, Kubosaki, Atsutaka, Manabe, Ri-ichiroh, Murata, Mitsuyoshi, Nagao-Sato, Sayaka, Nakazato, Kenichi, Ninomiya, Noriko, Nishiyori-Sueki, Hiromi, Noma, Shohei, Saijyo, Eri, Saka, Akiko, Sakai, Mizuho, Simon, Christophe, Suzuki, Naoko, Tagami, Michihira, Watanabe, Shoko, Yoshida, Shigehiro, Arner, Peter, Axton, Richard A., Babina, Magda, Baillie, J. Kenneth, Barnett, Timothy C., Beckhouse, Anthony G., Blumenthal, Antje, Bodega, Beatrice, Bonetti, Alessandro, Briggs, James, Brombacher, Frank, Carlisle, Ailsa J., Clevers, Hans C., Davis, Carrie A., Detmar, Michael, Dohi, Taeko, Edge, Albert S.B., Edinger, Matthias, Ehrlund, Anna, Ekwall, Karl, Endoh, Mitsuhiro, Enomoto, Hideki, Eslami, Afsaneh, Fagiolini, Michela, Fairbairn, Lynsey, Farach-Carson, Mary C., Faulkner, Geoffrey J., Ferrai, Carmelo, Fisher, Malcolm E., Forrester, Lesley M., Fujita, Rie, Furusawa, Jun-ichi, Geijtenbeek, Teunis B., Gingeras, Thomas, Goldowitz, Daniel, Guhl, Sven, Guler, Reto, Gustincich, Stefano, Ha, Thomas J., Hamaguchi, Masahide, Hara, Mitsuko, Hasegawa, Yuki, Herlyn, Meenhard, Heutink, Peter, Hitchens, Kelly J., Hume, David A., Ikawa, Tomokatsu, Ishizu, Yuri, Kai, Chieko, Kawamoto, Hiroshi, Kawamura, Yuki I., Kempfle, Judith S., Kenna, Tony J., Kere, Juha, Khachigian, Levon M., Kitamura, Toshio, Klein, Sarah, Klinken, S. Peter, Knox, Alan J., Kojima, Soichi, Koseki, Haruhiko, Koyasu, Shigeo, Lee, Weonju, Lennartsson, Andreas, Mackay-sim, Alan, Mejhert, Niklas, Mizuno, Yosuke, Morikawa, Hiromasa, Morimoto, Mitsuru, Moro, Kazuyo, Morris, Kelly J., Motohashi, Hozumi, Mummery, Christine L., Nakachi, Yutaka, Nakahara, Fumio, Nakamura, Toshiyuki, Nakamura, Yukio, Nozaki, Tadasuke, Ogishima, Soichi, Ohkura, Naganari, Ohno, Hiroshi, Ohshima, Mitsuhiro, Okada-Hatakeyama, Mariko, Okazaki, Yasushi, Orlando, Valerio, Ovchinnikov, Dmitry A., Passier, Robert, Patrikakis, Margaret, Pombo, Ana, Pradhan-Bhatt, Swati, Qin, Xian-Yang, Rehli, Michael, Rizzu, Patrizia, Roy, Sugata, Sajantila, Antti, Sakaguchi, Shimon, Sato, Hiroki, Satoh, Hironori, Savvi, Suzana, Saxena, Alka, Schmidl, Christian, Schneider, Claudio, Schulze-Tanzil, Gundula G., Schwegmann, Anita, Sheng, Guojun, Shin, Jay W., Sugiyama, Daisuke, Sugiyama, Takaaki, Summers, Kim M., Takahashi, Naoko, Takai, Jun, Tanaka, Hiroshi, Tatsukawa, Hideki, Tomoiu, Andru, Toyoda, Hiroo, van de Wetering, Marc, van den Berg, Linda M., Verardo, Roberto, Vijayan, Dipti, Wells, Christine A., Winteringham, Louise N., Wolvetang, Ernst, Yamaguchi, Yoko, Yamamoto, Masayuki, Yanagi-Mizuochi, Chiyo, Yoneda, Misako, Yonekura, Yohei, Zhang, Peter G., Zucchelli, Silvia, Abugessaisa, Imad, Arner, Erik, Harshbarger, Jayson, Kondo, Atsushi, Lassmann, Timo, Lizio, Marina, Sahin, Serkan, Sengstag, Thierry, Severin, Jessica, Shimoji, Hisashi, Suzuki, Masanori, Suzuki, Harukazu, Kawai, Jun, Kondo, Naoto, Itoh, Masayoshi, Daub, Carsten O., Kasukawa, Takeya, Kawaji, Hideya, Carninci, Piero, Forrest, Alistair R.R., Hayashizaki, Yoshihide
Publicado 2017