Bioinformatic challenges for proteomic biomarkers of cancer

por Tabb, David L, Liebler, Daniel C
Publicado 2011

A Label-Free Proteomic and Complementary Metabolomic Analysis of Leaves of the Resurrection Plant Xerophyta schlechteri during Dehydration

por Gabier, Hawwa, Tabb, David L., Farrant, Jill M., Rafudeen, Mohamed Suhail
Publicado 2021

Comparative Proteomics Analysis between Maize and Sorghum Uncovers Important Proteins and Metabolic Pathways Mediating Drought Tolerance

por Ali, Ali Elnaeim Elbasheir, Husselmann, Lizex Hollenbach, Tabb, David L., Ludidi, Ndiko
Publicado 2023

Enabling proteomics-based identification of human cancer variations

por Li, Jing, Ma, Zeqiang, Slebos, Robbert JC, Tabb, David L, Liebler, Daniel C, Zhang, Bing
Publicado 2010

Correcting systematic bias and instrument measurement drift with mzRefinery

por Gibbons, Bryson C., Chambers, Matthew C., Monroe, Matthew E., Tabb, David L., Payne, Samuel H.
Publicado 2015

Network-assisted protein identification and data interpretation in shotgun proteomics

por Li, Jing, Zimmerman, Lisa J, Park, Byung-Hoon, Tabb, David L, Liebler, Daniel C, Zhang, Bing
Publicado 2009

Proteomic analysis of colon and rectal carcinoma using standard and customized databases

por Slebos, Robbert J.C., Wang, Xia, Wang, Xaojing, Zhang, Bing, Tabb, David L., Liebler, Daniel C.
Publicado 2015

Corrigendum: Proteomic analysis of colon and rectal carcinoma using standard and customized databases

por Slebos, Robbert J.C., Wang, Xia, Wang, Xiaojing, Zhang, Bing, Tabb, David L., Liebler, Daniel C.
Publicado 2015

Differential Localization and Dynamics of Class I Myosins in the Enterocyte Microvillus

por Benesh, Andrew E., Nambiar, Rajalakshmi, McConnell, Russell E., Mao, Suli, Tabb, David L., Tyska, Matthew J.
Publicado 2010

proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data

por Wang, Xiaojing, Slebos, Robbert J. C., Chambers, Matthew C., Tabb, David L., Liebler, Daniel C., Zhang, Bing
Publicado 2016

Proteomic Identification and Meta-Analysis in Salvia hispanica RNA-Seq de novo Assemblies

por Klein, Ashwil, Husselmann, Lizex H. H., Williams, Achmat, Bell, Liam, Cooper, Bret, Ragar, Brent, Tabb, David L.
Publicado 2021

QC Metrics from CPTAC Raw LC-MS/MS Data Interpreted through Multivariate Statistics

por Wang, Xia, Chambers, Matthew C., Vega-Montoto, Lorenzo J., Bunk, David M., Stein, Stephen E., Tabb, David L.
Publicado 2014

The enterocyte microvillus is a vesicle-generating organelle

por McConnell, Russell E., Higginbotham, James N., Shifrin, David A., Tabb, David L., Coffey, Robert J., Tyska, Matthew J.
Publicado 2009

Sipros Ensemble improves database searching and filtering for complex metaproteomics

por Guo, Xuan, Li, Zhou, Yao, Qiuming, Mueller, Ryan S, Eng, Jimmy K, Tabb, David L, Hervey, William Judson, Pan, Chongle
Publicado 2018

SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways

por Nweke, Ekene Emmanuel, Naicker, Previn, Aron, Shaun, Stoychev, Stoyan, Devar, John, Tabb, David L., Omoshoro-Jones, Jones, Smith, Martin, Candy, Geoffrey
Publicado 2020

MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets

por Potgieter, Matthys G., Nel, Andrew J. M., Fortuin, Suereta, Garnett, Shaun, Wendoh, Jerome M., Tabb, David L., Mulder, Nicola J., Blackburn, Jonathan M.
Publicado 2023

Wavelet-Based Peak Detection and a New Charge Inference Procedure for MS/MS Implemented in ProteoWizard’s msConvert

por French, William R., Zimmerman, Lisa J., Schilling, Birgit, Gibson, Bradford W., Miller, Christine A., Townsend, R. Reid, Sherrod, Stacy D., Goodwin, Cody R., McLean, John A., Tabb, David L.
Publicado 2014

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

por Griss, Johannes, Perez-Riverol, Yasset, Lewis, Steve, Tabb, David L., Dianes, José A., del-Toro, Noemi, Rurik, Marc, Walzer, Mathias W., Kohlbacher, Oliver, Hermjakob, Henning, Wang, Rui, Vizcaíno, Juan Antonio
Publicado 2016

Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification Rates

por Wang, Dong, Dasari, Surendra, Chambers, Matthew C., Holman, Jerry D., Chen, Kan, Liebler, Daniel C., Orton, Daniel J., Purvine, Samuel O., Monroe, Matthew E., Chung, Chang Y., Rose, Kristie L., Tabb, David L.
Publicado 2013

Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection

por Tabb, David L., Jeong, Kyowon, Druart, Karen, Gant, Megan S., Brown, Kyle A., Nicora, Carrie, Zhou, Mowei, Couvillion, Sneha, Nakayasu, Ernesto, Williams, Janet E., Peterson, Haley K., McGuire, Michelle K., McGuire, Mark A., Metz, Thomas O., Chamot-Rooke, Julia
Publicado 2023