IntSplice2: Prediction of the Splicing Effects of Intronic Single-Nucleotide Variants Using LightGBM Modeling

por Takeda, Jun-ichi, Fukami, Sae, Tamura, Akira, Shibata, Akihide, Ohno, Kinji
Publicado 2021

A comprehensive survey of human polymorphisms at conserved splice dinucleotides and its evolutionary relationship with alternative splicing

por Shimada, Makoto K, Hayakawa, Yosuke, Takeda, Jun-ichi, Gojobori, Takashi, Imanishi, Tadashi
Publicado 2010

FexSplice: A LightGBM-Based Model for Predicting the Splicing Effect of a Single Nucleotide Variant Affecting the First Nucleotide G of an Exon

por Joudaki, Atefeh, Takeda, Jun-ichi, Masuda, Akio, Ode, Rikumo, Fujiwara, Koichi, Ohno, Kinji
Publicado 2023

HnRNP C, YB-1 and hnRNP L coordinately enhance skipping of human MUSK exon 10 to generate a Wnt-insensitive MuSK isoform

por Nasrin, Farhana, Rahman, Mohammad Alinoor, Masuda, Akio, Ohe, Kenji, Takeda, Jun-ichi, Ohno, Kinji
Publicado 2014

H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational

por Takeda, Jun-ichi, Suzuki, Yutaka, Nakao, Mitsuteru, Kuroda, Tsuyoshi, Sugano, Sumio, Gojobori, Takashi, Imanishi, Tadashi
Publicado 2007

H-DBAS: human-transcriptome database for alternative splicing: update 2010

por Takeda, Jun-ichi, Suzuki, Yutaka, Sakate, Ryuichi, Sato, Yoshiharu, Gojobori, Takashi, Imanishi, Tadashi, Sugano, Sumio
Publicado 2010

Gene Expression Profile at the Motor Endplate of the Neuromuscular Junction of Fast-Twitch Muscle

por Huang, Kun, Li, Jin, Ito, Mikako, Takeda, Jun-Ichi, Ohkawara, Bisei, Ogi, Tomoo, Masuda, Akio, Ohno, Kinji
Publicado 2020

InMeRF: prediction of pathogenicity of missense variants by individual modeling for each amino acid substitution

por Takeda, Jun-ichi, Nanatsue, Kentaro, Yamagishi, Ryosuke, Ito, Mikako, Haga, Nobuhiko, Hirata, Hiromi, Ogi, Tomoo, Ohno, Kinji
Publicado 2020

Extremely low-frequency pulses of faint magnetic field induce mitophagy to rejuvenate mitochondria

por Toda, Takuro, Ito, Mikako, Takeda, Jun-ichi, Masuda, Akio, Mino, Hiroyuki, Hattori, Nobutaka, Mohri, Kaneo, Ohno, Kinji
Publicado 2022

Position-specific binding of FUS to nascent RNA regulates mRNA length

por Masuda, Akio, Takeda, Jun-ichi, Okuno, Tatsuya, Okamoto, Takaaki, Ohkawara, Bisei, Ito, Mikako, Ishigaki, Shinsuke, Sobue, Gen, Ohno, Kinji
Publicado 2015

SRSF1 suppresses selection of intron-distal 5′ splice site of DOK7 intron 4 to generate functional full-length Dok-7 protein

por Ahsan, Khalid Bin, Masuda, Akio, Rahman, Mohammad Alinoor, Takeda, Jun-ichi, Nazim, Mohammad, Ohkawara, Bisei, Ito, Mikako, Ohno, Kinji
Publicado 2017

Competitive regulation of alternative splicing and alternative polyadenylation by hnRNP H and CstF64 determines acetylcholinesterase isoforms

por Nazim, Mohammad, Masuda, Akio, Rahman, Mohammad Alinoor, Nasrin, Farhana, Takeda, Jun-ichi, Ohe, Kenji, Ohkawara, Bisei, Ito, Mikako, Ohno, Kinji
Publicado 2017

H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery

por Takeda, Jun-ichi, Yamasaki, Chisato, Murakami, Katsuhiko, Nagai, Yoko, Sera, Miho, Hara, Yuichiro, Obi, Nobuo, Habara, Takuya, Gojobori, Takashi, Imanishi, Tadashi
Publicado 2013

A Palindromic Motif in the −2084 to −2078 Upstream Region is Essential for ABCA12 Promoter Function in Cultured Human Keratinocytes

por Shimizu, Yoshitaka, Ogawa, Yasushi, Sugiura, Kazumitsu, Takeda, Jun-ichi, Sakai-Sawada, Kaori, Yanagi, Teruki, Kon, Atsushi, Sawamura, Daisuke, Shimizu, Hiroshi, Akiyama, Masashi
Publicado 2014

SRSF1 and hnRNP H antagonistically regulate splicing of COLQ exon 16 in a congenital myasthenic syndrome

por Rahman, Mohammad Alinoor, Azuma, Yoshiteru, Nasrin, Farhana, Takeda, Jun-ichi, Nazim, Mohammad, Ahsan, Khalid Bin, Masuda, Akio, Engel, Andrew G., Ohno, Kinji
Publicado 2015

Molecular Hydrogen Enhances Proliferation of Cancer Cells That Exhibit Potent Mitochondrial Unfolded Protein Response

por Hasegawa, Tomoya, Ito, Mikako, Hasegawa, Satoru, Teranishi, Masaki, Takeda, Koki, Negishi, Shuto, Nishiwaki, Hiroshi, Takeda, Jun-ichi, LeBaron, Tyler W., Ohno, Kinji
Publicado 2022

Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs

por Takeda, Jun-ichi, Suzuki, Yutaka, Sakate, Ryuichi, Sato, Yoshiharu, Seki, Masahide, Irie, Takuma, Takeuchi, Nono, Ueda, Takuya, Nakao, Mitsuteru, Sugano, Sumio, Gojobori, Takashi, Imanishi, Tadashi
Publicado 2008

H-InvDB in 2009: extended database and data mining resources for human genes and transcripts

por Yamasaki, Chisato, Murakami, Katsuhiko, Takeda, Jun-ichi, Sato, Yoshiharu, Noda, Akiko, Sakate, Ryuichi, Habara, Takuya, Nakaoka, Hajime, Todokoro, Fusano, Matsuya, Akihiro, Imanishi, Tadashi, Gojobori, Takashi
Publicado 2010

Splicing regulation of GFPT1 muscle-specific isoform and its roles in glucose metabolisms and neuromuscular junction

por Farshadyeganeh, Paniz, Nazim, Mohammad, Zhang, Ruchen, Ohkawara, Bisei, Nakajima, Kazuki, Rahman, Mohammad Alinoor, Nasrin, Farhana, Ito, Mikako, Takeda, Jun-ichi, Ohe, Kenji, Miyasaka, Yuki, Ohno, Tamio, Masuda, Akio, Ohno, Kinji
Publicado 2023

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNA...

por Takeda, Jun-ichi, Suzuki, Yutaka, Nakao, Mitsuteru, Barrero, Roberto A., Koyanagi, Kanako O., Jin, Lihua, Motono, Chie, Hata, Hiroko, Isogai, Takao, Nagai, Keiichi, Otsuki, Tetsuji, Kuryshev, Vladimir, Shionyu, Masafumi, Yura, Kei, Go, Mitiko, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Wiemann, Stefan, Nomura, Nobuo, Sugano, Sumio, Gojobori, Takashi, Imanishi, Tadashi
Publicado 2006