ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis

por Takko, Heli, Pajanoja, Ceren, Kurtzeborn, Kristen, Hsin, Jenny, Kuure, Satu, Kerosuo, Laura
Publicado 2020

Three-dimensional imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa

por Mondragón-Palomino, Octavio, Poceviciute, Roberta, Lignell, Antti, Griffiths, Jessica A., Takko, Heli, Ismagilov, Rustem F.
Publicado 2022

Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa

por Poceviciute, Roberta, Bogatyrev, Said R., Romano, Anna E., Dilmore, Amanda H., Mondragón-Palomino, Octavio, Takko, Heli, Pradhan, Ojas, Ismagilov, Rustem F.
Publicado 2023