Evidence of Conformational Selection Driving the Formation of Ligand Binding Sites in Protein-Protein Interfaces

por Bohnuud, Tanggis, Kozakov, Dima, Vajda, Sandor
Publicado 2014

ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT

por Porter, Kathryn A, Xia, Bing, Beglov, Dmitri, Bohnuud, Tanggis, Alam, Nawsad, Schueler-Furman, Ora, Kozakov, Dima
Publicado 2017

Quantifying the nativeness of antibody sequences using long short-term memory networks

por Wollacott, Andrew M, Xue, Chonghua, Qin, Qiuyuan, Hua, June, Bohnuud, Tanggis, Viswanathan, Karthik, Kolachalama, Vijaya B
Publicado 2019

A proteomic platform to identify off-target proteins associated with therapeutic modalities that induce protein degradation or gene silencing

por Liu, Xin, Zhang, Ye, Ward, Lucas D., Yan, Qinghong, Bohnuud, Tanggis, Hernandez, Rocio, Lao, Socheata, Yuan, Jing, Fan, Fan
Publicado 2021

FTMAP: extended protein mapping with user-selected probe molecules

por Ngan, Chi Ho, Bohnuud, Tanggis, Mottarella, Scott E., Beglov, Dmitri, Villar, Elizabeth A., Hall, David R., Kozakov, Dima, Vajda, Sandor
Publicado 2012

Patient-derived spheroids and patient-derived organoids simulate evolutions of lung cancer

por Surina, Tanggis, Suzuki, Tomoko, Hisata, Shu, Fujita, Kazutaka, Fujiwara, Satomi, Liu, Fangyuan, Fukushima, Noriyoshi, Suzuki, Takuji, Mato, Naoko, Hagiwara, Koichi
Publicado 2023

Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde

por Bohnuud, Tanggis, Beglov, Dmitri, Ngan, Chi Ho, Zerbe, Brandon, Hall, David R., Brenke, Ryan, Vajda, Sandor, Frank-Kamenetskii, Maxim D., Kozakov, Dima
Publicado 2012

Improved cytosine base editors generated from TadA variants

por Lam, Dieter K., Feliciano, Patricia R., Arif, Amena, Bohnuud, Tanggis, Fernandez, Thomas P., Gehrke, Jason M., Grayson, Phil, Lee, Kin D., Ortega, Manuel A., Sawyer, Courtney, Schwaegerle, Noah D., Peraro, Leila, Young, Lauren, Lee, Seung-Joo, Ciaramella, Giuseppe, Gaudelli, Nicole M.
Publicado 2023

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

por Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.
Publicado 2016