Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

por Nueda, María José, Tarazona, Sonia, Conesa, Ana
Publicado 2014

RGmatch: matching genomic regions to proximal genes in omics data integration

por Furió-Tarí, Pedro, Conesa, Ana, Tarazona, Sonia
Publicado 2016

acorde unravels functionally interpretable networks of isoform co-usage from single cell data

por Arzalluz-Luque, Angeles, Salguero, Pedro, Tarazona, Sonia, Conesa, Ana
Publicado 2022

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

por Furió-Tarí, Pedro, Tarazona, Sonia, Gabaldón, Toni, Enright, Anton J., Conesa, Ana
Publicado 2016

Identification and visualization of differential isoform expression in RNA-seq time series

por Nueda, María José, Martorell-Marugan, Jordi, Martí, Cristina, Tarazona, Sonia, Conesa, Ana
Publicado 2018

Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis

por Delaye, Luis, Ruiz-Ruiz, Susana, Calderon, Enrique, Tarazona, Sonia, Conesa, Ana, Moya, Andrés
Publicado 2018

MultiBaC: an R package to remove batch effects in multi-omic experiments

por Ugidos, Manuel, Nueda, María José, Prats-Montalbán, José M, Ferrer, Alberto, Conesa, Ana, Tarazona, Sonia
Publicado 2022

Functional assessment of time course microarray data

por Nueda, María José, Sebastián, Patricia, Tarazona, Sonia, García-García, Francisco, Dopazo, Joaquín, Ferrer, Alberto, Conesa, Ana
Publicado 2009

Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach

por Sánchez-Gaya, Víctor, Casaní-Galdón, Salvador, Ugidos, Manuel, Kuang, Zheng, Mellor, Jane, Conesa, Ana, Tarazona, Sonia
Publicado 2018

RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior

por Irmer, Henriette, Tarazona, Sonia, Sasse, Christoph, Olbermann, Patrick, Loeffler, Jürgen, Krappmann, Sven, Conesa, Ana, Braus, Gerhard H.
Publicado 2015

Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package

por Tarazona, Sonia, Furió-Tarí, Pedro, Turrà, David, Pietro, Antonio Di, Nueda, María José, Ferrer, Alberto, Conesa, Ana
Publicado 2015

A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6

por Nuño-Cabanes, Carme, Ugidos, Manuel, Tarazona, Sonia, Martín-Expósito, Manuel, Ferrer, Alberto, Rodríguez-Navarro, Susana, Conesa, Ana
Publicado 2020

Pathway network inference from gene expression data

por Ponzoni, Ignacio, Nueda, María José, Tarazona, Sonia, Götz, Stefan, Montaner, David, Dussaut, Julieta Sol, Dopazo, Joaquín, Conesa, Ana
Publicado 2014

Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients

por Rubio, Teresa, Felipo, Vicente, Tarazona, Sonia, Pastorelli, Roberta, Escudero-García, Desamparados, Tosca, Joan, Urios, Amparo, Conesa, Ana, Montoliu, Carmina
Publicado 2021

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data

por Hernández-de-Diego, Rafael, Tarazona, Sonia, Martínez-Mira, Carlos, Balzano-Nogueira, Leandro, Furió-Tarí, Pedro, Pappas, Georgios J, Conesa, Ana
Publicado 2018

Harmonization of quality metrics and power calculation in multi-omic studies

por Tarazona, Sonia, Balzano-Nogueira, Leandro, Gómez-Cabrero, David, Schmidt, Andreas, Imhof, Axel, Hankemeier, Thomas, Tegnér, Jesper, Westerhuis, Johan A., Conesa, Ana
Publicado 2020

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases

por Liu, Tianyuan, Salguero, Pedro, Petek, Marko, Martinez-Mira, Carlos, Balzano-Nogueira, Leandro, Ramšak, Živa, McIntyre, Lauren, Gruden, Kristina, Tarazona, Sonia, Conesa, Ana
Publicado 2022

Understanding disease mechanisms with models of signaling pathway activities

por Sebastian-Leon, Patricia, Vidal, Enrique, Minguez, Pablo, Conesa, Ana, Tarazona, Sonia, Amadoz, Alicia, Armero, Carmen, Salavert, Francisco, Vidal-Puig, Antonio, Montaner, David, Dopazo, Joaquín
Publicado 2014

A survey of best practices for RNA-seq data analysis

por Conesa, Ana, Madrigal, Pedro, Tarazona, Sonia, Gomez-Cabrero, David, Cervera, Alejandra, McPherson, Andrew, Szcześniak, Michał Wojciech, Gaffney, Daniel J., Elo, Laura L., Zhang, Xuegong, Mortazavi, Ali
Publicado 2016

Erratum to: A survey of best practices for RNA-seq data analysis

por Conesa, Ana, Madrigal, Pedro, Tarazona, Sonia, Gomez-Cabrero, David, Cervera, Alejandra, McPherson, Andrew, Szcześniak, Michal Wojciech, Gaffney, Daniel J., Elo, Laura L., Zhang, Xuegong, Mortazavi, Ali
Publicado 2016