Analysis of long and short enhancers in melanoma cell states

por Mauduit, David, Taskiran, Ibrahim Ihsan, Minnoye, Liesbeth, de Waegeneer, Maxime, Christiaens, Valerie, Hulselmans, Gert, Demeulemeester, Jonas, Wouters, Jasper, Aerts, Stein
Publicado 2021

Interpretation of allele-specific chromatin accessibility using cell state–aware deep learning

por Atak, Zeynep Kalender, Taskiran, Ibrahim Ihsan, Demeulemeester, Jonas, Flerin, Christopher, Mauduit, David, Minnoye, Liesbeth, Hulselmans, Gert, Christiaens, Valerie, Ghanem, Ghanem-Elias, Wouters, Jasper, Aerts, Stein
Publicado 2021

Identification of genomic enhancers through spatial integration of single‐cell transcriptomics and epigenomics

por Bravo González‐Blas, Carmen, Quan, Xiao‐Jiang, Duran‐Romaña, Ramon, Taskiran, Ibrahim Ihsan, Koldere, Duygu, Davie, Kristofer, Christiaens, Valerie, Makhzami, Samira, Hulselmans, Gert, de Waegeneer, Maxime, Mauduit, David, Poovathingal, Suresh, Aibar, Sara, Aerts, Stein
Publicado 2020

The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes

por Jacobs, Jelle, Atkins, Mardelle, Davie, Kristofer, Imrichova, Hana, Romanelli, Lucia, Christiaens, Valerie, Hulselmans, Gert, Potier, Delphine, Wouters, Jasper, Taskiran, Ibrahim Ihsan, Paciello, Giulia, González-Blas, Carmen Bravo, Koldere, Duygu, Aibar, Sara, Halder, Georg, Aerts, Stein
Publicado 2018

Cross-species analysis of enhancer logic using deep learning

por Minnoye, Liesbeth, Taskiran, Ibrahim Ihsan, Mauduit, David, Fazio, Maurizio, Van Aerschot, Linde, Hulselmans, Gert, Christiaens, Valerie, Makhzami, Samira, Seltenhammer, Monika, Karras, Panagiotis, Primot, Aline, Cadieu, Edouard, van Rooijen, Ellen, Marine, Jean-Christophe, Egidy, Giorgia, Ghanem, Ghanem-Elias, Zon, Leonard, Wouters, Jasper, Aerts, Stein
Publicado 2020