General transfer matrix formalism to calculate DNA–protein–drug binding in gene regulation: application to O(R) operator of phage λ

por Teif, Vladimir B.
Publicado 2007

Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities

por Teif, Vladimir B., Rippe, Karsten
Publicado 2009

NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data

por Vainshtein, Yevhen, Rippe, Karsten, Teif, Vladimir B.
Publicado 2017

Regulation of the Nucleosome Repeat Length In Vivo by the DNA Sequence, Protein Concentrations and Long-Range Interactions

por Beshnova, Daria A., Cherstvy, Andrey G., Vainshtein, Yevhen, Teif, Vladimir B.
Publicado 2014

NucPosDB: a database of nucleosome positioning in vivo and nucleosomics of cell-free DNA

por Shtumpf, Mariya, Piroeva, Kristan V., Agrawal, Shivam P., Jacob, Divya R., Teif, Vladimir B.
Publicado 2022

CTCF-dependent chromatin boundaries formed by asymmetric nucleosome arrays with decreased linker length

por Clarkson, Christopher T, Deeks, Emma A, Samarista, Ralph, Mamayusupova, Hulkar, Zhurkin, Victor B, Teif, Vladimir B
Publicado 2019

DNA sequence-dependent formation of heterochromatin nanodomains

por Thorn, Graeme J., Clarkson, Christopher T., Rademacher, Anne, Mamayusupova, Hulkar, Schotta, Gunnar, Rippe, Karsten, Teif, Vladimir B.
Publicado 2022

Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development

por Teif, Vladimir B., Beshnova, Daria A., Vainshtein, Yevhen, Marth, Caroline, Mallm, Jan-Philipp, Höfer, Thomas, Rippe, Karsten
Publicado 2014

Poly(ADP-ribosyl)ation associated changes in CTCF-chromatin binding and gene expression in breast cells

por Pavlaki, Ioanna, Docquier, France, Chernukhin, Igor, Kita, Georgia, Gretton, Svetlana, Clarkson, Christopher T., Teif, Vladimir B., Klenova, Elena
Publicado 2018

Strength is in engagement: The rise of an online scientific community during the COVID‐19 pandemic

por Cucinotta, Christine E, Martin, Benjamin J E, Noé González, Melvin, Raman, Pravrutha, Teif, Vladimir B, Vlaming, Hanneke
Publicado 2021

DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries

por Wiehle, Laura, Thorn, Graeme J., Raddatz, Günter, Clarkson, Christopher T., Rippe, Karsten, Lyko, Frank, Breiling, Achim, Teif, Vladimir B.
Publicado 2019

Linker histone epitopes are hidden by in situ higher-order chromatin structure

por Teif, Vladimir B., Gould, Travis J., Clarkson, Christopher T., Boyd, Logan, Antwi, Enoch B., Ishaque, Naveed, Olins, Ada L., Olins, Donald E.
Publicado 2020

Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the human AML cell line HL-60/S4

por Antwi, Enoch B., Olins, Ada, Teif, Vladimir B., Bieg, Matthias, Bauer, Tobias, Gu, Zuguang, Brors, Benedikt, Eils, Roland, Olins, Donald, Ishaque, Naveed
Publicado 2020

Nucleosome repositioning during differentiation of a human myeloid leukemia cell line

por Teif, Vladimir B., Mallm, Jan-Philipp, Sharma, Tanvi, Mark Welch, David B., Rippe, Karsten, Eils, Roland, Langowski, Jörg, Olins, Ada L., Olins, Donald E.
Publicado 2017

Nucleosome repositioning in chronic lymphocytic leukemia

por Piroeva, Kristan V., McDonald, Charlotte, Xanthopoulos, Charalampos, Fox, Chelsea, Clarkson, Christopher T., Mallm, Jan-Philipp, Vainshtein, Yevhen, Ruje, Luminita, Klett, Lara C., Stilgenbauer, Stephan, Mertens, Daniel, Kostareli, Efterpi, Rippe, Karsten, Teif, Vladimir B.
Publicado 2023

Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks

por Mallm, Jan‐Philipp, Iskar, Murat, Ishaque, Naveed, Klett, Lara C, Kugler, Sabrina J, Muino, Jose M, Teif, Vladimir B, Poos, Alexandra M, Großmann, Sebastian, Erdel, Fabian, Tavernari, Daniele, Koser, Sandra D, Schumacher, Sabrina, Brors, Benedikt, König, Rainer, Remondini, Daniel, Vingron, Martin, Stilgenbauer, Stephan, Lichter, Peter, Zapatka, Marc, Mertens, Daniel, Rippe, Karsten
Publicado 2019