Comparison of Analysis Tools for miRNA High Throughput Sequencing Using Nerve Crush as a Model

por Metpally, Raghu Prasad Rao, Nasser, Sara, Malenica, Ivana, Courtright, Amanda, Carlson, Elizabeth, Ghaffari, Layla, Villa, Stephen, Tembe, Waibhav, Van Keuren-Jensen, Kendall
Publicado 2013

The Marker State Space (MSS) Method for Classifying Clinical Samples

por Fallon, Brian P., Curnutte, Bryan, Maupin, Kevin A., Partyka, Katie, Choi, Sunguk, Brand, Randall E., Langmead, Christopher J., Tembe, Waibhav, Haab, Brian B.
Publicado 2013

Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays

por Homer, Nils, Szelinger, Szabolcs, Redman, Margot, Duggan, David, Tembe, Waibhav, Muehling, Jill, Pearson, John V., Stephan, Dietrich A., Nelson, Stanley F., Craig, David W.
Publicado 2008

Long insert whole genome sequencing for copy number variant and translocation detection

por Liang, Winnie S., Aldrich, Jessica, Tembe, Waibhav, Kurdoglu, Ahmet, Cherni, Irene, Phillips, Lori, Reiman, Rebecca, Baker, Angela, Weiss, Glen J., Carpten, John D., Craig, David W.
Publicado 2014

Profiles of Extracellular miRNA in Cerebrospinal Fluid and Serum from Patients with Alzheimer's and Parkinson's Diseases Correlate with Disease Status and Features of Pathology

por Burgos, Kasandra, Malenica, Ivana, Metpally, Raghu, Courtright, Amanda, Rakela, Benjamin, Beach, Thomas, Shill, Holly, Adler, Charles, Sabbagh, Marwan, Villa, Stephen, Tembe, Waibhav, Craig, David, Van Keuren-Jensen, Kendall
Publicado 2014

Open-access synthetic spike-in mRNA-seq data for cancer gene fusions

por Tembe, Waibhav D, Pond, Stephanie JK, Legendre, Christophe, Chuang, Han-Yu, Liang, Winnie S, Kim, Nancy E, Montel, Valerie, Wong, Shukmei, McDaniel, Timothy K, Craig, David W, Carpten, John D
Publicado 2014

Comparative RNA-Seq and Microarray Analysis of Gene Expression Changes in B-Cell Lymphomas of Canis familiaris

por Mooney, Marie, Bond, Jeffrey, Monks, Noel, Eugster, Emily, Cherba, David, Berlinski, Pamela, Kamerling, Steve, Marotti, Keith, Simpson, Heather, Rusk, Tony, Tembe, Waibhav, Legendre, Christophe, Benson, Hollie, Liang, Winnie, Webb, Craig Paul
Publicado 2013

Next-Generation Sequencing of Coccidioides immitis Isolated during Cluster Investigation

por Engelthaler, David M., Chiller, Tom, Schupp, James A., Colvin, Joshua, Beckstrom-Sternberg, Stephen M., Driebe, Elizabeth M., Moses, Tracy, Tembe, Waibhav, Sinari, Shripad, Beckstrom-Sternberg, James S., Christoforides, Alexis, Pearson, John V., Carpten, John, Keim, Paul, Peterson, Ashley, Terashita, Dawn, Balajee, S. Arunmozhi
Publicado 2011

Paired Tumor and Normal Whole Genome Sequencing of Metastatic Olfactory Neuroblastoma

por Weiss, Glen J., Liang, Winnie S., Izatt, Tyler, Arora, Shilpi, Cherni, Irene, Raju, Robert N., Hostetter, Galen, Kurdoglu, Ahmet, Christoforides, Alexis, Sinari, Shripad, Baker, Angela S., Metpally, Raghu, Tembe, Waibhav D., Phillips, Lori, Von Hoff, Daniel D., Craig, David W., Carpten, John D.
Publicado 2012

Personalized treatment of Sézary syndrome by targeting a novel CTLA4:CD28 fusion

por Sekulic, Aleksandar, Liang, Winnie S, Tembe, Waibhav, Izatt, Tyler, Kruglyak, Semyon, Kiefer, Jeffrey A, Cuyugan, Lori, Zismann, Victoria, Legendre, Christophe, Pittelkow, Mark R, Gohmann, John J, De Castro, Fernando R, Trent, Jeffrey, Carpten, John, Craig, David W, McDaniel, Timothy K
Publicado 2015

Deep Clonal Profiling of Formalin Fixed Paraffin Embedded Clinical Samples

por Holley, Tara, Lenkiewicz, Elizabeth, Evers, Lisa, Tembe, Waibhav, Ruiz, Christian, Gsponer, Joel R., Rentsch, Cyrill A., Bubendorf, Lukas, Stapleton, Mark, Amorese, Doug, Legendre, Christophe, Cunliffe, Heather E., McCullough, Ann E., Pockaj, Barbara, Craig, David, Carpten, John, Von Hoff, Daniel, Iacobuzio-Donahue, Christine, Barrett, Michael T.
Publicado 2012

Loss of the tumor suppressor SMARCA4 in small cell carcinoma of the ovary, hypercalcemic type (SCCOHT)

por Ramos, Pilar, Karnezis, Anthony N, Hendricks, William P D, Wang, Yemin, Tembe, Waibhav, Zismann, Victoria L, Legendre, Christophe, Liang, Winnie S, Russell, Megan L, Craig, David W, Farley, John H, Monk, Bradley J, Anthony, Stephen P, Sekulic, Aleksandar, Cunliffe, Heather E, Huntsman, David G, Trent, Jeffrey M
Publicado 2014

A somatic reference standard for cancer genome sequencing

por Craig, David W., Nasser, Sara, Corbett, Richard, Chan, Simon K., Murray, Lisa, Legendre, Christophe, Tembe, Waibhav, Adkins, Jonathan, Kim, Nancy, Wong, Shukmei, Baker, Angela, Enriquez, Daniel, Pond, Stephanie, Pleasance, Erin, Mungall, Andrew J., Moore, Richard A., McDaniel, Timothy, Ma, Yussanne, Jones, Steven J. M., Marra, Marco A., Carpten, John D., Liang, Winnie S.
Publicado 2016

Integrated Genomic and Epigenomic Analysis of Breast Cancer Brain Metastasis

por Salhia, Bodour, Kiefer, Jeff, Ross, Julianna T. D., Metapally, Raghu, Martinez, Rae Anne, Johnson, Kyle N., DiPerna, Danielle M., Paquette, Kimberly M., Jung, Sungwon, Nasser, Sara, Wallstrom, Garrick, Tembe, Waibhav, Baker, Angela, Carpten, John, Resau, Jim, Ryken, Timothy, Sibenaller, Zita, Petricoin, Emanuel F., Liotta, Lance A., Ramanathan, Ramesh K., Berens, Michael E., Tran, Nhan L.
Publicado 2014

Somatic inactivating PTPRJ mutations and dysregulated pathways identified in canine malignant melanoma by integrated comparative genomic analysis

por Hendricks, William P. D., Zismann, Victoria, Sivaprakasam, Karthigayini, Legendre, Christophe, Poorman, Kelsey, Tembe, Waibhav, Perdigones, Nieves, Kiefer, Jeffrey, Liang, Winnie, DeLuca, Valerie, Stark, Mitchell, Ruhe, Alison, Froman, Roe, Duesbery, Nicholas S., Washington, Megan, Aldrich, Jessica, Neff, Mark W., Huentelman, Matthew J., Hayward, Nicholas, Brown, Kevin, Thamm, Douglas, Post, Gerald, Khanna, Chand, Davis, Barbara, Breen, Matthew, Sekulic, Alexander, Trent, Jeffrey M.
Publicado 2018

Genome-Wide Characterization of Pancreatic Adenocarcinoma Patients Using Next Generation Sequencing

por Liang, Winnie S., Craig, David W., Carpten, John, Borad, Mitesh J., Demeure, Michael J., Weiss, Glen J., Izatt, Tyler, Sinari, Shripad, Christoforides, Alexis, Aldrich, Jessica, Kurdoglu, Ahmet, Barrett, Michael, Phillips, Lori, Benson, Hollie, Tembe, Waibhav, Braggio, Esteban, Kiefer, Jeffrey A., Legendre, Christophe, Posner, Richard, Hostetter, Galen H., Baker, Angela, Egan, Jan B., Han, Haiyong, Lake, Douglas, Stites, Edward C., Ramanathan, Ramesh K., Fonseca, Rafael, Stewart, A. Keith, Von Hoff, Daniel
Publicado 2012