Inferring microbiota functions from taxonomic genes: a review

por Djemiel, Christophe, Maron, Pierre-Alain, Terrat, Sébastien, Dequiedt, Samuel, Cottin, Aurélien, Ranjard, Lionel
Publicado 2022

Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region

por Siegel-Hertz, Katarzyna, Edel-Hermann, Véronique, Chapelle, Emilie, Terrat, Sébastien, Raaijmakers, Jos M., Steinberg, Christian
Publicado 2018

Soil microbial communities in the face of changing farming practices: A case study in an agricultural landscape in France

por Dunn, Laurie, Lang, Christophe, Marilleau, Nicolas, Terrat, Sébastien, Biju-Duval, Luc, Lelièvre, Mélanie, Perrin, Solène, Chemidlin Prévost-Bouré, Nicolas
Publicado 2021

Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation

por Peyretaillade, Eric, Gonçalves, Olivier, Terrat, Sébastien, Dugat-Bony, Eric, Wincker, Patrick, Cornman, Robert S, Evans, Jay D, Delbac, Frédéric, Peyret, Pierre
Publicado 2009

µgreen-db: a reference database for the 23S rRNA gene of eukaryotic plastids and cyanobacteria

por Djemiel, Christophe, Plassard, Damien, Terrat, Sébastien, Crouzet, Olivier, Sauze, Joana, Mondy, Samuel, Nowak, Virginie, Wingate, Lisa, Ogée, Jérôme, Maron, Pierre-Alain
Publicado 2020

Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development

por Terrat, Sébastien, Peyretaillade, Eric, Gonçalves, Olivier, Dugat-Bony, Eric, Gravelat, Fabrice, Moné, Anne, Biderre-Petit, Corinne, Boucher, Delphine, Troquet, Julien, Peyret, Pierre
Publicado 2010

Biogeography of Soil Bacterial Networks along a Gradient of Cropping Intensity

por Karimi, Battle, Dequiedt, Samuel, Terrat, Sébastien, Jolivet, Claudy, Arrouays, Dominique, Wincker, Patrick, Cruaud, Corinne, Bispo, Antonio, Chemidlin Prévost-Bouré, Nicolas, Ranjard, Lionel
Publicado 2019

Land Use History Shifts In Situ Fungal and Bacterial Successions following Wheat Straw Input into the Soil

por Tardy, Vincent, Chabbi, Abad, Charrier, Xavier, de Berranger, Christophe, Reignier, Tiffanie, Dequiedt, Samuel, Faivre-Primot, Céline, Terrat, Sébastien, Ranjard, Lionel, Maron, Pierre-Alain
Publicado 2015

Bacterial Community Diversity Harboured by Interacting Species

por Bili, Mikaël, Cortesero, Anne Marie, Mougel, Christophe, Gauthier, Jean Pierre, Ermel, Gwennola, Simon, Jean Christophe, Outreman, Yannick, Terrat, Sébastien, Mahéo, Frédérique, Poinsot, Denis
Publicado 2016

Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition

por Terrat, Sebastien, Plassart, Pierre, Bourgeois, Emilie, Ferreira, Stéphanie, Dequiedt, Samuel, Adele-Dit-De-Renseville, Nathalie, Lemanceau, Philippe, Bispo, Antonio, Chabbi, Abad, Maron, Pierre-Alain, Ranjard, Lionel
Publicado 2015

Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape

por Constancias, Florentin, Saby, Nicolas P A, Terrat, Sébastien, Dequiedt, Samuel, Horrigue, Wallid, Nowak, Virginie, Guillemin, Jean-Philippe, Biju-Duval, Luc, Chemidlin Prévost-Bouré, Nicolas, Ranjard, Lionel
Publicado 2015

Biogeographical patterns of the soil fungal:bacterial ratio across France

por Djemiel, Christophe, Dequiedt, Samuel, Bailly, Arthur, Tripied, Julie, Lelièvre, Mélanie, Horrigue, Walid, Jolivet, Claudy, Bispo, Antonio, Saby, Nicolas, Valé, Matthieu, Maron, Pierre-Alain, Ranjard, Lionel, Terrat, Sébastien
Publicado 2023

Mapping and determinism of soil microbial community distribution across an agricultural landscape

por Constancias, Florentin, Terrat, Sébastien, Saby, Nicolas P A, Horrigue, Walid, Villerd, Jean, Guillemin, Jean-Philippe, Biju-Duval, Luc, Nowak, Virginie, Dequiedt, Samuel, Ranjard, Lionel, Chemidlin Prévost-Bouré, Nicolas
Publicado 2015

Tillage intensity and pasture in rotation effectively shape soil microbial communities at a landscape scale

por Le Guillou, Cédric, Chemidlin Prévost‐Bouré, Nicolas, Karimi, Battle, Akkal‐Corfini, Nouraya, Dequiedt, Samuel, Nowak, Virginie, Terrat, Sébastien, Menasseri‐Aubry, Safya, Viaud, Valérie, Maron, Pierre‐Alain, Ranjard, Lionel
Publicado 2018

Potential of Meta-Omics to Provide Modern Microbial Indicators for Monitoring Soil Quality and Securing Food Production

por Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Horrigue, Walid, Bailly, Arthur, Boutaleb, Ali, Sadet-Bourgeteau, Sophie, Maron, Pierre-Alain, Chemidlin Prévost-Bouré, Nicolas, Ranjard, Lionel, Terrat, Sébastien
Publicado 2022

BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons

por Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, El Djoudi, Yassin, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Chemidlin Prévost-Bouré, Nicolas, Maron, Pierre-Alain, Ranjard, Lionel, Terrat, Sébastien
Publicado 2020

Evaluation of the ISO Standard 11063 DNA Extraction Procedure for Assessing Soil Microbial Abundance and Community Structure

por Plassart, Pierre, Terrat, Sébastien, Thomson, Bruce, Griffiths, Robert, Dequiedt, Samuel, Lelievre, Mélanie, Regnier, Tiffanie, Nowak, Virginie, Bailey, Mark, Lemanceau, Philippe, Bispo, Antonio, Chabbi, Abad, Maron, Pierre-Alain, Mougel, Christophe, Ranjard, Lionel
Publicado 2012

Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure

por Terrat, Sébastien, Christen, Richard, Dequiedt, Samuel, Lelièvre, Mélanie, Nowak, Virginie, Regnier, Tiffanie, Bachar, Dipankar, Plassart, Pierre, Wincker, Patrick, Jolivet, Claudy, Bispo, Antonio, Lemanceau, Philippe, Maron, Pierre‐Alain, Mougel, Christophe, Ranjard, Lionel
Publicado 2012

Biogeography of soil bacteria and archaea across France

por Karimi, Battle, Terrat, Sébastien, Dequiedt, Samuel, Saby, Nicolas P. A., Horrigue, Walid, Lelièvre, Mélanie, Nowak, Virginie, Jolivet, Claudy, Arrouays, Dominique, Wincker, Patrick, Cruaud, Corinne, Bispo, Antonio, Maron, Pierre-Alain, Bouré, Nicolas Chemidlin Prévost, Ranjard, Lionel
Publicado 2018

Mapping and predictive variations of soil bacterial richness across France

por Terrat, Sébastien, Horrigue, Walid, Dequietd, Samuel, Saby, Nicolas P. A., Lelièvre, Mélanie, Nowak, Virginie, Tripied, Julie, Régnier, Tiffanie, Jolivet, Claudy, Arrouays, Dominique, Wincker, Patrick, Cruaud, Corinne, Karimi, Battle, Bispo, Antonio, Maron, Pierre Alain, Chemidlin Prévost-Bouré, Nicolas, Ranjard, Lionel
Publicado 2017