Advances in Visualization Tools for Phylogenomic and Phylodynamic Studies of Viral Diseases

por Theys, Kristof, Lemey, Philippe, Vandamme, Anne-Mieke, Baele, Guy
Publicado 2019

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

por Libin, Pieter J K, Deforche, Koen, Abecasis, Ana B, Theys, Kristof
Publicado 2019

Genetic Diversity and Selective Pressure in Hepatitis C Virus Genotypes 1–6: Significance for Direct-Acting Antiviral Treatment and Drug Resistance

por Cuypers, Lize, Li, Guangdi, Libin, Pieter, Piampongsant, Supinya, Vandamme, Anne-Mieke, Theys, Kristof
Publicado 2015

Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV

por Theys, Kristof, Feder, Alison F., Gelbart, Maoz, Hartl, Marion, Stern, Adi, Pennings, Pleuni S.
Publicado 2018

Correction: Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV

por Theys, Kristof, Feder, Alison F., Gelbart, Maoz, Hartl, Marion, Stern, Adi, Pennings, Pleuni S.
Publicado 2018

HIV-1 Gag C-terminal amino acid substitutions emerging under selective pressure of protease inhibitors in patient populations infected with different HIV-1 subtypes

por Li, Guangdi, Verheyen, Jens, Theys, Kristof, Piampongsant, Supinya, Van Laethem, Kristel, Vandamme, Anne-Mieke
Publicado 2014

Functional conservation of HIV-1 Gag: implications for rational drug design

por Li, Guangdi, Verheyen, Jens, Rhee, Soo-Yon, Voet, Arnout, Vandamme, Anne-Mieke, Theys, Kristof
Publicado 2013

Characterization of Nucleoside Reverse Transcriptase Inhibitor-Associated Mutations in the RNase H Region of HIV-1 Subtype C Infected Individuals

por Ngcapu, Sinaye, Theys, Kristof, Libin, Pieter, Marconi, Vincent C., Sunpath, Henry, Ndung’u, Thumbi, Gordon, Michelle L.
Publicado 2017

HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012

por Pineda-Peña, Andrea-Clemencia, Theys, Kristof, Stylianou, Dora C., Demetriades, Ioannis, Abecasis, Ana B., Kostrikis, Leondios G.
Publicado 2018

Zika genomics urgently need standardized and curated reference sequences

por Theys, Kristof, Libin, Pieter, Dallmeier, Kai, Pineda-Peña, Andrea-Clemencia, Vandamme, Anne-Mieke, Cuypers, Lize, Abecasis, Ana B.
Publicado 2017

Mapping the genomic diversity of HCV subtypes 1a and 1b: Implications of structural and immunological constraints for vaccine and drug development

por Cuypers, Lize, Li, Guangdi, Neumann-Haefelin, Christoph, Piampongsant, Supinya, Libin, Pieter, Van Laethem, Kristel, Vandamme, Anne-Mieke, Theys, Kristof
Publicado 2016

SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination

por Jariani, Abbas, Warth, Christopher, Deforche, Koen, Libin, Pieter, Drummond, Alexei J, Rambaut, Andrew, Matsen IV, Frederick A, Theys, Kristof
Publicado 2019

PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context

por Libin, Pieter, Vanden Eynden, Ewout, Incardona, Francesca, Nowé, Ann, Bezenchek, Antonia, Sönnerborg, Anders, Vandamme, Anne-Mieke, Theys, Kristof, Baele, Guy
Publicado 2017

HIV-1 gp120 N-linked glycosylation differs between plasma and leukocyte compartments

por Ho, Yung Shwen, Abecasis, Ana B, Theys, Kristof, Deforche, Koen, Dwyer, Dominic E, Charleston, Michael, Vandamme, Anne Mieke, Saksena, Nitin K
Publicado 2008

A new ensemble coevolution system for detecting HIV-1 protein coevolution

por Li, Guangdi, Theys, Kristof, Verheyen, Jens, Pineda-Peña, Andrea-Clemencia, Khouri, Ricardo, Piampongsant, Supinya, Eusébio, Mónica, Ramon, Jan, Vandamme, Anne-Mieke
Publicado 2015

An integrated map of HIV genome-wide variation from a population perspective

por Li, Guangdi, Piampongsant, Supinya, Faria, Nuno Rodrigues, Voet, Arnout, Pineda-Peña, Andrea-Clemencia, Khouri, Ricardo, Lemey, Philippe, Vandamme, Anne-Mieke, Theys, Kristof
Publicado 2015

Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals

por Winand, Raf, Theys, Kristof, Eusébio, Mónica, Aerts, Jan, Camacho, Ricardo J., Gomes, Perpetua, Suchard, Marc A., Vandamme, Anne-Mieke, Abecasis, Ana B.
Publicado 2015

Sub-Epidemics Explain Localized High Prevalence of Reduced Susceptibility to Rilpivirine in Treatment-Naive HIV-1-Infected Patients: Subtype and Geographic Compartmentalization of...

por Theys, Kristof, Van Laethem, Kristel, Gomes, Perpetua, Baele, Guy, Pineda-Peña, Andrea-Clemencia, Vandamme, Anne-Mieke, Camacho, Ricardo J., Abecasis, Ana B.
Publicado 2016

Drivers of HIV-1 transmission: The Portuguese case

por Pineda-Peña, Andrea-Clemencia, Pingarilho, Marta, Li, Guangdi, Vrancken, Bram, Libin, Pieter, Gomes, Perpétua, Camacho, Ricardo Jorge, Theys, Kristof, Barroso Abecasis, Ana
Publicado 2019

The incidence of multidrug and full class resistance in HIV-1 infected patients is decreasing over time (2001–2006) in Portugal

por Vercauteren, Jurgen, Deforche, Koen, Theys, Kristof, Debruyne, Michiel, Duque, Luis Miguel, Peres, Susana, Carvalho, Ana Patricia, Mansinho, Kamal, Vandamme, Anne-Mieke, Camacho, Ricardo
Publicado 2008