Identification and characterization of pseudogenes in the rice gene complement

por Thibaud-Nissen, Françoise, Ouyang, Shu, Buell, C Robin
Publicado 2009

EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome

por Thibaud-Nissen, Françoise, Campbell, Matthew, Hamilton, John P, Zhu, Wei, Buell, C Robin
Publicado 2007

The TIGR Rice Genome Annotation Resource: improvements and new features

por Ouyang, Shu, Zhu, Wei, Hamilton, John, Lin, Haining, Campbell, Matthew, Childs, Kevin, Thibaud-Nissen, Françoise, Malek, Renae L., Lee, Yuandan, Zheng, Li, Orvis, Joshua, Haas, Brian, Wortman, Jennifer, Buell, C. Robin
Publicado 2007

Assembly: a resource for assembled genomes at NCBI

por Kitts, Paul A., Church, Deanna M., Thibaud-Nissen, Françoise, Choi, Jinna, Hem, Vichet, Sapojnikov, Victor, Smith, Robert G., Tatusova, Tatiana, Xiang, Charlie, Zherikov, Andrey, DiCuccio, Michael, Murphy, Terence D., Pruitt, Kim D., Kimchi, Avi
Publicado 2016

A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes

por Vignal, Alain, Boitard, Simon, Thébault, Noémie, Dayo, Guiguigbaza‐Kossigan, Yapi‐Gnaore, Valentine, Youssao Abdou Karim, Issaka, Berthouly‐Salazar, Cécile, Pálinkás‐Bodzsár, Nóra, Guémené, Daniel, Thibaud‐Nissen, Francoise, Warren, Wesley C., Tixier‐Boichard, Michèle, Rognon, Xavier
Publicado 2019

Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity

por Low, Wai Yee, Tearle, Rick, Bickhart, Derek M., Rosen, Benjamin D., Kingan, Sarah B., Swale, Thomas, Thibaud-Nissen, Françoise, Murphy, Terence D., Young, Rachel, Lefevre, Lucas, Hume, David A., Collins, Andrew, Ajmone-Marsan, Paolo, Smith, Timothy P. L., Williams, John L.
Publicado 2019

The Egyptian Rousette Genome Reveals Unexpected Features of Bat Antiviral Immunity

por Pavlovich, Stephanie S., Lovett, Sean P., Koroleva, Galina, Guito, Jonathan C., Arnold, Catherine E., Nagle, Elyse R., Kulcsar, Kirsten, Lee, Albert, Thibaud-Nissen, Françoise, Hume, Adam J., Mühlberger, Elke, Uebelhoer, Luke S., Towner, Jonathan S., Rabadan, Raul, Sanchez-Lockhart, Mariano, Kepler, Thomas B., Palacios, Gustavo
Publicado 2018

The Genome of C57BL/6J “Eve”, the Mother of the Laboratory Mouse Genome Reference Strain

por Sarsani, Vishal Kumar, Raghupathy, Narayanan, Fiddes, Ian T., Armstrong, Joel, Thibaud-Nissen, Francoise, Zinder, Oraya, Bolisetty, Mohan, Howe, Kerstin, Hinerfeld, Doug, Ruan, Xiaoan, Rowe, Lucy, Barter, Mary, Ananda, Guruprasad, Paten, Benedict, Weinstock, George M., Churchill, Gary A., Wiles, Michael V., Schneider, Valerie A., Srivastava, Anuj, Reinholdt, Laura G.
Publicado 2019

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

por Miller, Jason R, Koren, Sergey, Dilley, Kari A, Puri, Vinita, Brown, David M, Harkins, Derek M, Thibaud-Nissen, Françoise, Rosen, Benjamin, Chen, Xiao-Guang, Tu, Zhijian, Sharakhov, Igor V, Sharakhova, Maria V, Sebra, Robert, Stockwell, Timothy B, Bergman, Nicholas H, Sutton, Granger G, Phillippy, Adam M, Piermarini, Peter M, Shabman, Reed S
Publicado 2018

RefSeq: an update on prokaryotic genome annotation and curation

por Haft, Daniel H, DiCuccio, Michael, Badretdin, Azat, Brover, Vyacheslav, Chetvernin, Vyacheslav, O’Neill, Kathleen, Li, Wenjun, Chitsaz, Farideh, Derbyshire, Myra K, Gonzales, Noreen R, Gwadz, Marc, Lu, Fu, Marchler, Gabriele H, Song, James S, Thanki, Narmada, Yamashita, Roxanne A, Zheng, Chanjuan, Thibaud-Nissen, Françoise, Geer, Lewis Y, Marchler-Bauer, Aron, Pruitt, Kim D
Publicado 2018

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the...

por Vodkin, Lila O, Khanna, Anupama, Shealy, Robin, Clough, Steven J, Gonzalez, Delkin Orlando, Philip, Reena, Zabala, Gracia, Thibaud-Nissen, Françoise, Sidarous, Mark, Strömvik, Martina V, Shoop, Elizabeth, Schmidt, Christina, Retzel, Ernest, Erpelding, John, Shoemaker, Randy C, Rodriguez-Huete, Alicia M, Polacco, Joseph C, Coryell, Virginia, Keim, Paul, Gong, George, Liu, Lei, Pardinas, Jose, Schweitzer, Peter
Publicado 2004

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

por Low, Wai Yee, Tearle, Rick, Liu, Ruijie, Koren, Sergey, Rhie, Arang, Bickhart, Derek M., Rosen, Benjamin D., Kronenberg, Zev N., Kingan, Sarah B., Tseng, Elizabeth, Thibaud-Nissen, Françoise, Martin, Fergal J., Billis, Konstantinos, Ghurye, Jay, Hastie, Alex R., Lee, Joyce, Pang, Andy W. C., Heaton, Michael P., Phillippy, Adam M., Hiendleder, Stefan, Smith, Timothy P. L., Williams, John L.
Publicado 2020

Long-read sequencing and de novo assembly of a Chinese genome

por Shi, Lingling, Guo, Yunfei, Dong, Chengliang, Huddleston, John, Yang, Hui, Han, Xiaolu, Fu, Aisi, Li, Quan, Li, Na, Gong, Siyi, Lintner, Katherine E., Ding, Qiong, Wang, Zou, Hu, Jiang, Wang, Depeng, Wang, Feng, Wang, Lin, Lyon, Gholson J., Guan, Yongtao, Shen, Yufeng, Evgrafov, Oleg V., Knowles, James A., Thibaud-Nissen, Francoise, Schneider, Valerie, Yu, Chack-Yung, Zhou, Libing, Eichler, Evan E., So, Kwok-Fai, Wang, Kai
Publicado 2016

The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes

por Bond, Donna M., Ortega-Recalde, Oscar, Laird, Melanie K., Hayakawa, Takashi, Richardson, Kyle S., Reese, Finlay.C. B., Kyle, Bruce, McIsaac-Williams, Brooke E., Robertson, Bruce C., van Heezik, Yolanda, Adams, Amy L., Chang, Wei-Shan, Haase, Bettina, Mountcastle, Jacquelyn, Driller, Maximilian, Collins, Joanna, Howe, Kerstin, Go, Yasuhiro, Thibaud-Nissen, Francoise, Lister, Nicholas C., Waters, Paul D., Fedrigo, Olivier, Jarvis, Erich D., Gemmell, Neil J., Alexander, Alana, Hore, Timothy A.
Publicado 2023

Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment

por Scott, Jeffrey G, Warren, Wesley C, Beukeboom, Leo W, Bopp, Daniel, Clark, Andrew G, Giers, Sarah D, Hediger, Monika, Jones, Andrew K, Kasai, Shinji, Leichter, Cheryl A, Li, Ming, Meisel, Richard P, Minx, Patrick, Murphy, Terence D, Nelson, David R, Reid, William R, Rinkevich, Frank D, Robertson, Hugh M, Sackton, Timothy B, Sattelle, David B, Thibaud-Nissen, Francoise, Tomlinson, Chad, van de Zande, Louis, Walden, Kimberly KO, Wilson, Richard K, Liu, Nannan
Publicado 2014

Improved reference genome of the arboviral vector Aedes albopictus

por Palatini, Umberto, Masri, Reem A., Cosme, Luciano V., Koren, Sergey, Thibaud-Nissen, Françoise, Biedler, James K., Krsticevic, Flavia, Johnston, J. Spencer, Halbach, Rebecca, Crawford, Jacob E., Antoshechkin, Igor, Failloux, Anna-Bella, Pischedda, Elisa, Marconcini, Michele, Ghurye, Jay, Rhie, Arang, Sharma, Atashi, Karagodin, Dmitry A., Jenrette, Jeremy, Gamez, Stephanie, Miesen, Pascal, Masterson, Patrick, Caccone, Adalgisa, Sharakhova, Maria V., Tu, Zhijian, Papathanos, Philippos A., Van Rij, Ronald P., Akbari, Omar S., Powell, Jeffrey, Phillippy, Adam M., Bonizzoni, Mariangela
Publicado 2020

Author Correction: Improved reference genome of the arboviral vector Aedes albopictus

por Palatini, Umberto, Masri, Reem A., Cosme, Luciano V., Koren, Sergey, Thibaud-Nissen, Françoise, Biedler, James K., Krsticevic, Flavia, Johnston, J. Spencer, Halbach, Rebecca, Crawford, Jacob E., Antoshechkin, Igor, Failloux, Anna-Bella, Pischedda, Elisa, Marconcini, Michele, Ghurye, Jay, Rhie, Arang, Sharma, Atashi, Karagodin, Dmitry A., Jenrette, Jeremy, Gamez, Stephanie, Miesen, Pascal, Masterson, Patrick, Caccone, Adalgisa, Sharakhova, Maria V., Tu, Zhijian, Papathanos, Philippos A., Van Rij, Ronald P., Akbari, Omar S., Powell, Jeffrey, Phillippy, Adam M., Bonizzoni, Mariangela
Publicado 2021

RefSeq: an update on mammalian reference sequences

por Pruitt, Kim D., Brown, Garth R., Hiatt, Susan M., Thibaud-Nissen, Françoise, Astashyn, Alexander, Ermolaeva, Olga, Farrell, Catherine M., Hart, Jennifer, Landrum, Melissa J., McGarvey, Kelly M., Murphy, Michael R., O’Leary, Nuala A., Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Shkeda, Andrei, Sun, Hanzhen, Tamez, Pamela, Tully, Raymond E., Wallin, Craig, Webb, David, Weber, Janet, Wu, Wendy, DiCuccio, Michael, Kitts, Paul, Maglott, Donna R., Murphy, Terence D., Ostell, James M.
Publicado 2014

A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

por Warren, Wesley C., Hillier, LaDeana W., Tomlinson, Chad, Minx, Patrick, Kremitzki, Milinn, Graves, Tina, Markovic, Chris, Bouk, Nathan, Pruitt, Kim D., Thibaud-Nissen, Francoise, Schneider, Valerie, Mansour, Tamer A., Brown, C. Titus, Zimin, Aleksey, Hawken, Rachel, Abrahamsen, Mitch, Pyrkosz, Alexis B., Morisson, Mireille, Fillon, Valerie, Vignal, Alain, Chow, William, Howe, Kerstin, Fulton, Janet E., Miller, Marcia M., Lovell, Peter, Mello, Claudio V., Wirthlin, Morgan, Mason, Andrew S., Kuo, Richard, Burt, David W., Dodgson, Jerry B., Cheng, Hans H.
Publicado 2016

Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50)

por Williams, John L, Iamartino, Daniela, Pruitt, Kim D, Sonstegard, Tad, Smith, Timothy P L, Low, Wai Yee, Biagini, Tommaso, Bomba, Lorenzo, Capomaccio, Stefano, Castiglioni, Bianca, Coletta, Angelo, Corrado, Federica, Ferré, Fabrizio, Iannuzzi, Leopoldo, Lawley, Cynthia, Macciotta, Nicolò, McClure, Matthew, Mancini, Giordano, Matassino, Donato, Mazza, Raffaele, Milanesi, Marco, Moioli, Bianca, Morandi, Nicola, Ramunno, Luigi, Peretti, Vincenzo, Pilla, Fabio, Ramelli, Paola, Schroeder, Steven, Strozzi, Francesco, Thibaud-Nissen, Francoise, Zicarelli, Luigi, Ajmone-Marsan, Paolo, Valentini, Alessio, Chillemi, Giovanni, Zimin, Aleksey
Publicado 2017