The bench scientist's guide to statistical analysis of RNA-Seq data

por Yendrek, Craig R, Ainsworth, Elizabeth A, Thimmapuram, Jyothi
Publicado 2012

ViewBS: a powerful toolkit for visualization of high-throughput bisulfite sequencing data

por Huang, Xiaosan, Zhang, Shaoling, Li, Kongqing, Thimmapuram, Jyothi, Xie, Shaojun
Publicado 2018

Identification and analysis of common bean (Phaseolus vulgaris L.) transcriptomes by massively parallel pyrosequencing

por Kalavacharla, Venu, Liu, Zhanji, Meyers, Blake C, Thimmapuram, Jyothi, Melmaiee, Kalpalatha
Publicado 2011

Analyses of methylomes of upland and lowland switchgrass (Panicum virgatum) ecotypes using MeDIP-seq and BS-seq

por Dworkin, Mollee, Xie, Shaojun, Saha, Malay, Thimmapuram, Jyothi, Kalavacharla, Venu (Kal)
Publicado 2017

Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

por Ponniah, Sathish K., Thimmapuram, Jyothi, Bhide, Ketaki, Kalavacharla, Venu (Kal), Manoharan, Muthusamy
Publicado 2017

Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L.)

por Horvath, David P, Chao, Wun S, Suttle, Jeffrey C, Thimmapuram, Jyothi, Anderson, James V
Publicado 2008

Metatranscriptomic profiles of Eastern subterranean termites, Reticulitermes flavipes (Kollar) fed on second generation feedstocks

por Rajarapu, Swapna Priya, Shreve, Jacob T, Bhide, Ketaki P, Thimmapuram, Jyothi, Scharf, Michael E
Publicado 2015

Mechanism of activation of porcine dendritic cells by an α-D-glucan nanoparticle adjuvant and a nanoparticle/poly(I:C) combination adjuvant

por Hernandez-Franco, Juan F., Xie, Shaojun, Thimmapuram, Jyothi, Ragland, Darryl, HogenEsch, Harm
Publicado 2022

Comparative Transcriptome Analysis of Tolerant and Sensitive Genotypes of Common Bean (Phaseolus vulgaris L.) in Response to Terminal Drought Stress

por Subramani, Mayavan, Urrea, Carlos A., Habib, Rasheed, Bhide, Ketaki, Thimmapuram, Jyothi, Kalavacharla, Venu
Publicado 2023

Changes in the core endophytic mycobiome of carrot taproots in response to crop management and genotype

por Abdelrazek, Sahar, Choudhari, Sulbha, Thimmapuram, Jyothi, Simon, Philipp, Colley, Micaela, Mengiste, Tesfaye, Hoagland, Lori
Publicado 2020

A Study of Alterations in DNA Epigenetic Modifications (5mC and 5hmC) and Gene Expression Influenced by Simulated Microgravity in Human Lymphoblastoid Cells

por Chowdhury, Basudev, Seetharam, Arun, Wang, Zhiping, Liu, Yunlong, Lossie, Amy C., Thimmapuram, Jyothi, Irudayaraj, Joseph
Publicado 2016

The origin and biosynthesis of the naphthalenoid moiety of juglone in black walnut

por McCoy, Rachel M., Utturkar, Sagar M., Crook, Joseph W., Thimmapuram, Jyothi, Widhalm, Joshua R.
Publicado 2018

Comparative Hessian Fly Larval Transcriptomics Provides Novel Insight into Host and Nonhost Resistance

por Subramanyam, Subhashree, Nemacheck, Jill A., Xie, Shaojun, Bhide, Ketaki, Thimmapuram, Jyothi, Scofield, Steven R., Sardesai, Nagesh
Publicado 2021

Genome-wide identification of histone methylation (H3K9(me2)) and acetylation (H4K12(ac)) marks in two ecotypes of switchgrass (Panicum virgatum L.)

por Ayyappan, Vasudevan, Sripathi, Venkateswara R., Kalavacharla, Venu ( Kal), Saha, Malay C., Thimmapuram, Jyothi, Bhide, Ketaki P., Fiedler, Elizabeth
Publicado 2019

Transcriptome Responses to Defined Insecticide Selection Pressures in the German Cockroach (Blattella germanica L.)

por Scharf, Michael E., Wolfe, Zachery M., Raje, Kapil R., Fardisi, Mahsa, Thimmapuram, Jyothi, Bhide, Ketaki, Gondhalekar, Ameya D.
Publicado 2022

Transcriptomics in Erigeron canadensis reveals rapid photosynthetic and hormonal responses to auxin herbicide application

por McCauley, Cara L, McAdam, Scott A M, Bhide, Ketaki, Thimmapuram, Jyothi, Banks, Jo Ann, Young, Bryan G
Publicado 2020

Analysis of 16S rRNA Amplicon Sequencing Options on the Roche/454 Next-Generation Titanium Sequencing Platform

por Tamaki, Hideyuki, Wright, Chris L., Li, Xiangzhen, Lin, Qiaoyan, Hwang, Chiachi, Wang, Shiping, Thimmapuram, Jyothi, Kamagata, Yoichi, Liu, Wen-Tso
Publicado 2011

RNA sequencing identifies transcriptional changes in the rabbit larynx in response to low humidity challenge

por Bailey, Taylor W., dos Santos, Andrea Pires, do Nascimento, Naila Cannes, Xie, Shaojun, Thimmapuram, Jyothi, Sivasankar, M. Preeti, Cox, Abigail
Publicado 2020

Transcriptome Sequencing of the Blind Subterranean Mole Rat, Spalax galili: Utility and Potential for the Discovery of Novel Evolutionary Patterns

por Malik, Assaf, Korol, Abraham, Hübner, Sariel, Hernandez, Alvaro G., Thimmapuram, Jyothi, Ali, Shahjahan, Glaser, Fabian, Paz, Arnon, Avivi, Aaron, Band, Mark
Publicado 2011

Comparative transcriptome profiling of upland (VS16) and lowland (AP13) ecotypes of switchgrass

por Ayyappan, Vasudevan, Saha, Malay C., Thimmapuram, Jyothi, Sripathi, Venkateswara R., Bhide, Ketaki P., Fiedler, Elizabeth, Hayford, Rita K., Kalavacharla, Venu (Kal)
Publicado 2016