Multiple levels of the unknown in microbiome research

por Thomas, Andrew Maltez, Segata, Nicola
Publicado 2019

Genes Encoding Microbial Acyl Coenzyme A Binding Protein/Diazepam-Binding Inhibitor Orthologs Are Rare in the Human Gut Microbiome and Show No Links to Obesity

por Thomas, Andrew Maltez, Asnicar, Francesco, Kroemer, Guido, Segata, Nicola
Publicado 2021

Deletion and low expression of NFKBIA are associated with poor prognosis in lower-grade glioma patients

por Kinker, Gabriela Sarti, Thomas, Andrew Maltez, Carvalho, Vinicius Jardim, Lima, Felipe Prata, Fujita, André
Publicado 2016

Microbiomes of Field-Grown Maize and Soybean in Southeastern and Central Brazil Inferred by High-Throughput 16S and Internal Transcribed Spacer Amplicon Sequencing

por Rossmann, Maike, Thomas, Andrew Maltez, Guima, Suzana Sato, Martins, Layla Farage, Inderbitzin, Patrik, Knight-Connoni, Victoria, da Silva, Aline Maria, Setubal, João C.
Publicado 2021

Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples

por Tarallo, Sonia, Ferrero, Giulio, Gallo, Gaetano, Francavilla, Antonio, Clerico, Giuseppe, Realis Luc, Alberto, Manghi, Paolo, Thomas, Andrew Maltez, Vineis, Paolo, Segata, Nicola, Pardini, Barbara, Naccarati, Alessio, Cordero, Francesca
Publicado 2019

Correction for Tarallo et al., “Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples”

por Tarallo, Sonia, Ferrero, Giulio, Gallo, Gaetano, Francavilla, Antonio, Clerico, Giuseppe, Realis Luc, Alberto, Manghi, Paolo, Thomas, Andrew Maltez, Vineis, Paolo, Segata, Nicola, Pardini, Barbara, Naccarati, Alessio, Cordero, Francesca
Publicado 2020

Alcohol and tobacco consumption affects bacterial richness in oral cavity mucosa biofilms

por Thomas, Andrew Maltez, Gleber-Netto, Frederico Omar, Fernandes, Gustavo Ribeiro, Amorim, Maria, Barbosa, Luisa Fernanda, Francisco, Ana Lúcia Noronha, Guerra de Andrade, Arthur, Setubal, João Carlos, Kowalski, Luiz Paulo, Nunes, Diana Noronha, Dias-Neto, Emmanuel
Publicado 2014

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

por Asnicar, Francesco, Thomas, Andrew Maltez, Beghini, Francesco, Mengoni, Claudia, Manara, Serena, Manghi, Paolo, Zhu, Qiyun, Bolzan, Mattia, Cumbo, Fabio, May, Uyen, Sanders, Jon G., Zolfo, Moreno, Kopylova, Evguenia, Pasolli, Edoardo, Knight, Rob, Mirarab, Siavash, Huttenhower, Curtis, Segata, Nicola
Publicado 2020

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

por Beghini, Francesco, McIver, Lauren J, Blanco-Míguez, Aitor, Dubois, Leonard, Asnicar, Francesco, Maharjan, Sagun, Mailyan, Ana, Manghi, Paolo, Scholz, Matthias, Thomas, Andrew Maltez, Valles-Colomer, Mireia, Weingart, George, Zhang, Yancong, Zolfo, Moreno, Huttenhower, Curtis, Franzosa, Eric A, Segata, Nicola
Publicado 2021

Dysregulation of the PRUNE2/PCA3 genetic axis in human prostate cancer: from experimental discovery to validation in two independent patient cohorts

por Lauer, Richard C, Barry, Marc, Smith, Tracey L, Thomas, Andrew Maltez, Wu, Jin, Du, Ruofei, Lee, Ji-Hyun, Rao, Arpit, Dobroff, Andrey S, Arap, Marco A, Nunes, Diana N, Silva, Israel T, Dias-Neto, Emmanuel, Chen, Isan, McCance, Dennis J, Cavenee, Webster K, Pasqualini, Renata, Arap, Wadih
Publicado 2023

Gut Microbiota Profile of Obese Diabetic Women Submitted to Roux-en-Y Gastric Bypass and Its Association with Food Intake and Postoperative Diabetes Remission

por Al Assal, Karina, Prifti, Edi, Belda, Eugeni, Sala, Priscila, Clément, Karine, Dao, Maria-Carlota, Doré, Joel, Levenez, Florence, Taddei, Carla R., Fonseca, Danielle Cristina, Rocha, Ilanna Marques, Balmant, Bianca Depieri, Thomas, Andrew Maltez, Santo, Marco A., Dias-Neto, Emmanuel, Setubal, João Carlos, Zucker, Jean-Daniel, Belarmino, Giliane, Torrinhas, Raquel Susana, Waitzberg, Dan L.
Publicado 2020

Tributyrin Attenuates Metabolic and Inflammatory Changes Associated with Obesity through a GPR109A-Dependent Mechanism

por Sato, Fabio Takeo, Yap, Yu Anne, Crisma, Amanda Rabello, Portovedo, Mariana, Murata, Gilson Masahiro, Hirabara, Sandro Massao, Ribeiro, Willian Rodrigues, Marcantonio Ferreira, Caroline, Cruz, Maysa Mariana, Pereira, Joice Naiara Bertaglia, Payolla, Tanyara Baliani, Guima, Suzana Eiko Sato, Thomas, Andrew Maltez, Setubal, João Carlos, Alonso-Vale, Maria Isabel Cardoso, Santos, Marinilce Fagundes, Curi, Rui, Marino, Eliana, Vinolo, Marco A. R.
Publicado 2020

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

por Blanco-Míguez, Aitor, Beghini, Francesco, Cumbo, Fabio, McIver, Lauren J., Thompson, Kelsey N., Zolfo, Moreno, Manghi, Paolo, Dubois, Leonard, Huang, Kun D., Thomas, Andrew Maltez, Nickols, William A., Piccinno, Gianmarco, Piperni, Elisa, Punčochář, Michal, Valles-Colomer, Mireia, Tett, Adrian, Giordano, Francesca, Davies, Richard, Wolf, Jonathan, Berry, Sarah E., Spector, Tim D., Franzosa, Eric A., Pasolli, Edoardo, Asnicar, Francesco, Huttenhower, Curtis, Segata, Nicola
Publicado 2023

Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions

por Blanco-Míguez, Aitor, Gálvez, Eric J.C., Pasolli, Edoardo, De Filippis, Francesca, Amend, Lena, Huang, Kun D., Manghi, Paolo, Lesker, Till-Robin, Riedel, Thomas, Cova, Linda, Punčochář, Michal, Thomas, Andrew Maltez, Valles-Colomer, Mireia, Schober, Isabel, Hitch, Thomas C.A., Clavel, Thomas, Berry, Sarah E., Davies, Richard, Wolf, Jonathan, Spector, Tim D., Overmann, Jörg, Tett, Adrian, Ercolini, Danilo, Segata, Nicola, Strowig, Till
Publicado 2023

Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics

por Antunes, Luciana Principal, Martins, Layla Farage, Pereira, Roberta Verciano, Thomas, Andrew Maltez, Barbosa, Deibs, Lemos, Leandro Nascimento, Silva, Gianluca Major Machado, Moura, Livia Maria Silva, Epamino, George Willian Condomitti, Digiampietri, Luciano Antonio, Lombardi, Karen Cristina, Ramos, Patricia Locosque, Quaggio, Ronaldo Bento, de Oliveira, Julio Cezar Franco, Pascon, Renata Castiglioni, Cruz, João Batista da, da Silva, Aline Maria, Setubal, João Carlos
Publicado 2016

Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment

por Terrisse, Safae, Derosa, Lisa, Iebba, Valerio, Ghiringhelli, François, Vaz-Luis, Ines, Kroemer, Guido, Fidelle, Marine, Christodoulidis, Stergios, Segata, Nicola, Thomas, Andrew Maltez, Martin, Anne-Laure, Sirven, Aude, Everhard, Sibille, Aprahamian, Fanny, Nirmalathasan, Nitharsshini, Aarnoutse, Romy, Smidt, Marjolein, Ziemons, Janine, Caldas, Carlos, Loibl, Sibylle, Denkert, Carsten, Durand, Sylvere, Iglesias, Claudia, Pietrantonio, Filippo, Routy, Bertrand, André, Fabrice, Pasolli, Edoardo, Delaloge, Suzette, Zitvogel, Laurence
Publicado 2021

Circulating inflammatory proteins associate with response to immune checkpoint inhibition therapy in patients with advanced melanoma

por Rossi, Niccolò, Lee, Karla A., Bermudez, Maria V., Visconti, Alessia, Thomas, Andrew Maltez, Bolte, Laura A., Björk, Johannes R., de Ruijter, Laura Kist, Newton-Bishop, Julia, Harland, Mark, Shaw, Heather M., Harries, Mark, Sacco, Joseph, Board, Ruth, Lorigan, Paul, de Vries, Elisabeth G.E., Segata, Nicola, Taams, Leonie, Papa, Sophie, Spector, Tim D., Nathan, Paul, Weersma, Rinse K., Hospers, Geke A.P., Fehrmann, Rudolf S.N., Bataille, Veronique, Falchi, Mario
Publicado 2022

Complete genome sequence and analysis of Alcaligenes faecalis strain Mc250, a new potential plant bioinoculant

por Felestrino, Érica Barbosa, Sanchez, Angélica Bianchini, Caneschi, Washington Luiz, Lemes, Camila Gracyelle de Carvalho, Assis, Renata de Almeida Barbosa, Cordeiro, Isabella Ferreira, Fonseca, Natasha Peixoto, Villa, Morghana Marina, Vieira, Izadora Tabuso, Kamino, Luciana Hiromi Yoshino, do Carmo, Flávio Fonseca, da Silva, Aline Maria, Thomas, Andrew Maltez, Patané, José Salvatore Leister, Ferreira, Fernanda Carla, de Freitas, Leandro Grassi, Varani, Alessandro de Mello, Ferro, Jesus Aparecido, Silva, Robson Soares, Almeida, Nalvo Franco, Garcia, Camila Carrião Machado, Setubal, João Carlos, Moreira, Leandro Marcio
Publicado 2020

Immune system and intestinal microbiota determine efficacy of androgen deprivation therapy against prostate cancer

por Terrisse, Safae, Goubet, Anne-Gaelle, Ueda, Kousuke, Thomas, Andrew Maltez, Quiniou, Valentin, Thelemaque, Cassandra, Dunsmore, Garett, Clave, Emmanuel, Gamat-Huber, Melissa, Yonekura, Satoru, Ferrere, Gladys, Rauber, Conrad, Pham, Hang Phuong, Fahrner, Jean-Eudes, Pizzato, Eugenie, Ly, Pierre, Fidelle, Marine, Mazzenga, Marine, Costa Silva, Carolina Alves, Armanini, Federica, Pinto, Federica, Asnicar, Francesco, Daillère, Romain, Derosa, Lisa, Richard, Corentin, Blanchard, Pierre, Routy, Bertrand, Culine, Stéphane, Opolon, Paule, Silvin, Aymeric, Ginhoux, Florent, Toubert, Antoine, Segata, Nicola, McNeel, Douglas G, Fizazi, Karim, Kroemer, Guido, Zitvogel, Laurence
Publicado 2022

Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma

por Lee, Karla A., Thomas, Andrew Maltez, Bolte, Laura A., Björk, Johannes R., de Ruijter, Laura Kist, Armanini, Federica, Asnicar, Francesco, Blanco-Miguez, Aitor, Board, Ruth, Calbet-Llopart, Neus, Derosa, Lisa, Dhomen, Nathalie, Brooks, Kelly, Harland, Mark, Harries, Mark, Leeming, Emily R., Lorigan, Paul, Manghi, Paolo, Marais, Richard, Newton-Bishop, Julia, Nezi, Luigi, Pinto, Federica, Potrony, Miriam, Puig, Susana, Serra-Bellver, Patricio, Shaw, Heather M., Tamburini, Sabrina, Valpione, Sara, Vijay, Amrita, Waldron, Levi, Zitvogel, Laurence, Zolfo, Moreno, de Vries, Elisabeth G. E., Nathan, Paul, Fehrmann, Rudolf S. N., Bataille, Véronique, Hospers, Geke A. P., Spector, Tim D., Weersma, Rinse K., Segata, Nicola
Publicado 2022