Referee: Reference Assembly Quality Scores

por Thomas, Gregg W C, Hahn, Matthew W
Publicado 2019

The Effects of Increasing the Number of Taxa on Inferences of Molecular Convergence

por Thomas, Gregg W. C., Hahn, Matthew W., Hahn, Yoonsoo
Publicado 2017

Evolution of salivary glue genes in Drosophila species

por Da Lage, Jean-Luc, Thomas, Gregg W. C., Bonneau, Magalie, Courtier-Orgogozo, Virginie
Publicado 2019

Tissue-specific expression profiles and positive selection analysis in the tree swallow (Tachycineta bicolor) using a de novo transcriptome assembly

por Bentz, Alexandra B., Thomas, Gregg W. C., Rusch, Douglas B., Rosvall, Kimberly A.
Publicado 2019

PhyloAcc-GT: A Bayesian Method for Inferring Patterns of Substitution Rate Shifts on Targeted Lineages Accounting for Gene Tree Discordance

por Yan, Han, Hu, Zhirui, Thomas, Gregg W C, Edwards, Scott V, Sackton, Timothy B, Liu, Jun S
Publicado 2023

Origins and Long-Term Patterns of Copy-Number Variation in Rhesus Macaques

por Thomas, Gregg W C, Wang, Richard J, Nguyen, Jelena, Alan Harris, R, Raveendran, Muthuswamy, Rogers, Jeffrey, Hahn, Matthew W
Publicado 2020

The genomic landscape, causes, and consequences of extensive phylogenomic discordance in Old World mice and rats

por Thomas, Gregg W. C., Hughes, Jonathan J., Kumon, Tomohiro, Berv, Jacob S., Nordgren, C. Erik, Lampson, Michael, Levine, Mia, Searle, Jeremy B., Good, Jeffrey M.
Publicado 2023

The Evolution of Widespread Recombination Suppression on the Dwarf Hamster (Phodopus) X Chromosome

por Moore, Emily C., Thomas, Gregg W. C., Mortimer, Sebastian, Kopania, Emily E. K., Hunnicutt, Kelsie E., Clare-Salzler, Zachary J., Larson, Erica L., Good, Jeffrey M.
Publicado 2022

Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability

por Wang, Richard J., Thomas, Gregg W.C., Raveendran, Muthuswamy, Harris, R. Alan, Doddapaneni, Harshavardhan, Muzny, Donna M., Capitanio, John P., Radivojac, Predrag, Rogers, Jeffrey, Hahn, Matthew W.
Publicado 2020

Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise

por Prost, Stefan, Armstrong, Ellie E, Nylander, Johan, Thomas, Gregg W C, Suh, Alexander, Petersen, Bent, Dalen, Love, Benz, Brett W, Blom, Mozes P K, Palkopoulou, Eleftheria, Ericson, Per G P, Irestedt, Martin
Publicado 2019

Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly

por Warren, Wesley C., García-Pérez, Raquel, Xu, Sen, Lampert, Kathrin P., Chalopin, Domitille, Stöck, Matthias, Loewe, Laurence, Lu, Yuan, Kuderna, Lukas, Minx, Patrick, Montague, Michael J., Tomlinson, Chad, Hillier, LaDeana W., Murphy, Daniel N., Wang, John, Wang, Zhongwei, Garcia, Constantino Macias, Thomas, Gregg W. C., Volff, Jean-Nicolas, Farias, Fabiana, Aken, Bronwen, Walter, Ronald B., Pruitt, Kim D., Marques-Bonet, Tomas, Hahn, Matthew W., Kneitz, Susanne, Lynch, Michael, Schartl, Manfred
Publicado 2018

Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host

por Palesch, David, Bosinger, Steven E., Tharp, Gregory K., Vanderford, Thomas H., Paiardini, Mirko, Chahroudi, Ann, Johnson, Zachary P., Kirchhoff, Frank, Hahn, Beatrice H., Norgren, Robert B., Patel, Nirav B., Sodora, Donald L., Dawoud, Reem A., Stewart, Caro-Beth, Seepo, Sara M., Harris, R. Alan, Liu, Yue, Raveendran, Muthuswamy, Han, Yi, English, Adam, Thomas, Gregg W. C., Hahn, Matthew W., Pipes, Lenore, Mason, Christopher E., Muzny, Donna M., Gibbs, Richard A., Sauter, Daniel, Worley, Kim, Rogers, Jeffrey, Silvestri, Guido
Publicado 2018

Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits

por Sun, Cheng, Huang, Jiaxing, Wang, Yun, Zhao, Xiaomeng, Su, Long, Thomas, Gregg W C, Zhao, Mengya, Zhang, Xingtan, Jungreis, Irwin, Kellis, Manolis, Vicario, Saverio, Sharakhov, Igor V, Bondarenko, Semen M, Hasselmann, Martin, Kim, Chang N, Paten, Benedict, Penso-Dolfin, Luca, Wang, Li, Chang, Yuxiao, Gao, Qiang, Ma, Ling, Ma, Lina, Zhang, Zhang, Zhang, Hongbo, Zhang, Huahao, Ruzzante, Livio, Robertson, Hugh M, Zhu, Yihui, Liu, Yanjie, Yang, Huipeng, Ding, Lele, Wang, Quangui, Ma, Dongna, Xu, Weilin, Liang, Cheng, Itgen, Michael W, Mee, Lauren, Cao, Gang, Zhang, Ze, Sadd, Ben M, Hahn, Matthew W, Schaack, Sarah, Barribeau, Seth M, Williams, Paul H, Waterhouse, Robert M, Mueller, Rachel Lockridge
Publicado 2020

Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits

por Sun, Cheng, Huang, Jiaxing, Wang, Yun, Zhao, Xiaomeng, Su, Long, Thomas, Gregg W C, Zhao, Mengya, Zhang, Xingtan, Jungreis, Irwin, Kellis, Manolis, Vicario, Saverio, Sharakhov, Igor V, Bondarenko, Semen M, Hasselmann, Martin, Kim, Chang N, Paten, Benedict, Penso-Dolfin, Luca, Wang, Li, Chang, Yuxiao, Gao, Qiang, Ma, Ling, Ma, Lina, Zhang, Zhang, Zhang, Hongbo, Zhang, Huahao, Ruzzante, Livio, Robertson, Hugh M, Zhu, Yihui, Liu, Yanjie, Yang, Huipeng, Ding, Lele, Wang, Quangui, Ma, Dongna, Xu, Weilin, Liang, Cheng, Itgen, Michael W, Mee, Lauren, Cao, Gang, Zhang, Ze, Sadd, Ben M, Hahn, Matthew W, Schaack, Sarah, Barribeau, Seth M, Williams, Paul H, Waterhouse, Robert M, Mueller, Rachel Lockridge
Publicado 2021

The genome of the vervet (Chlorocebus aethiops sabaeus)

por Warren, Wesley C., Jasinska, Anna J., García-Pérez, Raquel, Svardal, Hannes, Tomlinson, Chad, Rocchi, Mariano, Archidiacono, Nicoletta, Capozzi, Oronzo, Minx, Patrick, Montague, Michael J., Kyung, Kim, Hillier, LaDeana W., Kremitzki, Milinn, Graves, Tina, Chiang, Colby, Hughes, Jennifer, Tran, Nam, Huang, Yu, Ramensky, Vasily, Choi, Oi-wa, Jung, Yoon J., Schmitt, Christopher A., Juretic, Nikoleta, Wasserscheid, Jessica, Turner, Trudy R., Wiseman, Roger W., Tuscher, Jennifer J., Karl, Julie A., Schmitz, Jörn E., Zahn, Roland, O'Connor, David H., Redmond, Eugene, Nisbett, Alex, Jacquelin, Béatrice, Müller-Trutwin, Michaela C., Brenchley, Jason M., Dione, Michel, Antonio, Martin, Schroth, Gary P., Kaplan, Jay R., Jorgensen, Matthew J., Thomas, Gregg W.C., Hahn, Matthew W., Raney, Brian J., Aken, Bronwen, Nag, Rishi, Schmitz, Juergen, Churakov, Gennady, Noll, Angela, Stanyon, Roscoe, Webb, David, Thibaud-Nissen, Francoise, Nordborg, Magnus, Marques-Bonet, Tomas, Dewar, Ken, Weinstock, George M., Wilson, Richard K., Freimer, Nelson B.
Publicado 2015

A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

por Schoville, Sean D., Chen, Yolanda H., Andersson, Martin N., Benoit, Joshua B., Bhandari, Anita, Bowsher, Julia H., Brevik, Kristian, Cappelle, Kaat, Chen, Mei-Ju M., Childers, Anna K., Childers, Christopher, Christiaens, Olivier, Clements, Justin, Didion, Elise M., Elpidina, Elena N., Engsontia, Patamarerk, Friedrich, Markus, García-Robles, Inmaculada, Gibbs, Richard A., Goswami, Chandan, Grapputo, Alessandro, Gruden, Kristina, Grynberg, Marcin, Henrissat, Bernard, Jennings, Emily C., Jones, Jeffery W., Kalsi, Megha, Khan, Sher A., Kumar, Abhishek, Li, Fei, Lombard, Vincent, Ma, Xingzhou, Martynov, Alexander, Miller, Nicholas J., Mitchell, Robert F., Munoz-Torres, Monica, Muszewska, Anna, Oppert, Brenda, Palli, Subba Reddy, Panfilio, Kristen A., Pauchet, Yannick, Perkin, Lindsey C., Petek, Marko, Poelchau, Monica F., Record, Éric, Rinehart, Joseph P., Robertson, Hugh M., Rosendale, Andrew J., Ruiz-Arroyo, Victor M., Smagghe, Guy, Szendrei, Zsofia, Thomas, Gregg W.C., Torson, Alex S., Vargas Jentzsch, Iris M., Weirauch, Matthew T., Yates, Ashley D., Yocum, George D., Yoon, June-Sun, Richards, Stephen
Publicado 2018

Gene content evolution in the arthropods

por Thomas, Gregg W. C., Dohmen, Elias, Hughes, Daniel S. T., Murali, Shwetha C., Poelchau, Monica, Glastad, Karl, Anstead, Clare A., Ayoub, Nadia A., Batterham, Phillip, Bellair, Michelle, Binford, Greta J., Chao, Hsu, Chen, Yolanda H., Childers, Christopher, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Duan, Jian J., Dugan, Shannon, Esposito, Lauren A., Friedrich, Markus, Garb, Jessica, Gasser, Robin B., Goodisman, Michael A. D., Gundersen-Rindal, Dawn E., Han, Yi, Handler, Alfred M., Hatakeyama, Masatsugu, Hering, Lars, Hunter, Wayne B., Ioannidis, Panagiotis, Jayaseelan, Joy C., Kalra, Divya, Khila, Abderrahman, Korhonen, Pasi K., Lee, Carol Eunmi, Lee, Sandra L., Li, Yiyuan, Lindsey, Amelia R. I., Mayer, Georg, McGregor, Alistair P., McKenna, Duane D., Misof, Bernhard, Munidasa, Mala, Munoz-Torres, Monica, Muzny, Donna M., Niehuis, Oliver, Osuji-Lacy, Nkechinyere, Palli, Subba R., Panfilio, Kristen A., Pechmann, Matthias, Perry, Trent, Peters, Ralph S., Poynton, Helen C., Prpic, Nikola-Michael, Qu, Jiaxin, Rotenberg, Dorith, Schal, Coby, Schoville, Sean D., Scully, Erin D., Skinner, Evette, Sloan, Daniel B., Stouthamer, Richard, Strand, Michael R., Szucsich, Nikolaus U., Wijeratne, Asela, Young, Neil D., Zattara, Eduardo E., Benoit, Joshua B., Zdobnov, Evgeny M., Pfrender, Michael E., Hackett, Kevin J., Werren, John H., Worley, Kim C., Gibbs, Richard A., Chipman, Ariel D., Waterhouse, Robert M., Bornberg-Bauer, Erich, Hahn, Matthew W., Richards, Stephen
Publicado 2020

Gibbon genome and the fast karyotype evolution of small apes

por Carbone, Lucia, Alan Harris, R., Gnerre, Sante, Veeramah, Krishna R., Lorente-Galdos, Belen, Huddleston, John, Meyer, Thomas J., Herrero, Javier, Roos, Christian, Aken, Bronwen, Anaclerio, Fabio, Archidiacono, Nicoletta, Baker, Carl, Barrell, Daniel, Batzer, Mark A., Beal, Kathryn, Blancher, Antoine, Bohrson, Craig L., Brameier, Markus, Campbell, Michael S., Capozzi, Oronzo, Casola, Claudio, Chiatante, Giorgia, Cree, Andrew, Damert, Annette, de Jong, Pieter J., Dumas, Laura, Fernandez-Callejo, Marcos, Flicek, Paul, Fuchs, Nina V., Gut, Ivo, Gut, Marta, Hahn, Matthew W., Hernandez-Rodriguez, Jessica, Hillier, LaDeana W., Hubley, Robert, Ianc, Bianca, Izsvák, Zsuzsanna, Jablonski, Nina G., Johnstone, Laurel M., Karimpour-Fard, Anis, Konkel, Miriam K., Kostka, Dennis, Lazar, Nathan H., Lee, Sandra L., Lewis, Lora R., Liu, Yue, Locke, Devin P., Mallick, Swapan, Mendez, Fernando L., Muffato, Matthieu, Nazareth, Lynne V., Nevonen, Kimberly A., O’Bleness, Majesta, Ochis, Cornelia, Odom, Duncan T., Pollard, Katherine S., Quilez, Javier, Reich, David, Rocchi, Mariano, Schumann, Gerald G., Searle, Stephen, Sikela, James M., Skollar, Gabriella, Smit, Arian, Sonmez, Kemal, Hallers, Boudewijn ten, Terhune, Elizabeth, Thomas, Gregg W. C., Ullmer, Brygg, Ventura, Mario, Walker, Jerilyn A., Wall, Jeffrey D., Walter, Lutz, Ward, Michelle C., Wheelan, Sarah J., Whelan, Christopher W., White, Simon, Wilhelm, Larry J., Woerner, August E., Yandell, Mark, Zhu, Baoli, Hammer, Michael F., Marques-Bonet, Tomas, Eichler, Evan E., Fulton, Lucinda, Fronick, Catrina, Muzny, Donna M., Warren, Wesley C., Worley, Kim C., Rogers, Jeffrey, Wilson, Richard K., Gibbs, Richard A.
Publicado 2014