Statistical approaches for differential expression analysis in metatranscriptomics

por Zhang, Yancong, Thompson, Kelsey N, Huttenhower, Curtis, Franzosa, Eric A
Publicado 2021

RNA-based amplicon sequencing is ineffective in measuring metabolic activity in environmental microbial communities

por Wang, Ya, Thompson, Kelsey N., Yan, Yan, Short, Meghan I., Zhang, Yancong, Franzosa, Eric A., Shen, Jiaxian, Hartmann, Erica M., Huttenhower, Curtis
Publicado 2023

Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach

por Wang, Ya, Yan, Yan, Thompson, Kelsey N., Bae, Sena, Accorsi, Emma K., Zhang, Yancong, Shen, Jiaxian, Vlamakis, Hera, Hartmann, Erica M., Huttenhower, Curtis
Publicado 2021

The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries

por Young, Caroline, Wood, Henry M., Seshadri, Ramakrishnan Ayloor, Van Nang, Pham, Vaccaro, Carlos, Melendez, Luis Contreras, Bose, Mayilvahanan, Van Doi, Mai, Piñero, Tamara Alejandra, Valladares, Camilo Tapia, Arguero, Julieta, Balaguer, Alba Fuentes, Thompson, Kelsey N., Yan, Yan, Huttenhower, Curtis, Quirke, Philip
Publicado 2021

Multivariable association discovery in population-scale meta-omics studies

por Mallick, Himel, Rahnavard, Ali, McIver, Lauren J., Ma, Siyuan, Zhang, Yancong, Nguyen, Long H., Tickle, Timothy L., Weingart, George, Ren, Boyu, Schwager, Emma H., Chatterjee, Suvo, Thompson, Kelsey N., Wilkinson, Jeremy E., Subramanian, Ayshwarya, Lu, Yiren, Waldron, Levi, Paulson, Joseph N., Franzosa, Eric A., Bravo, Hector Corrada, Huttenhower, Curtis
Publicado 2021

The Sulfur Microbial Diet and Risk of Colorectal Cancer by Molecular Subtypes and Intratumoral Microbial Species in Adult Men

por Sikavi, Daniel R., Nguyen, Long H., Haruki, Koichiro, Ugai, Tomotaka, Ma, Wenjie, Wang, Dong D., Thompson, Kelsey N., Yan, Yan, Branck, Tobyn, Wilkinson, Jeremy E., Akimoto, Naohiko, Zhong, Rong, Lau, Mai Chan, Mima, Kosuke, Kosumi, Keisuke, Morikawa, Teppei, Rimm, Eric B., Garrett, Wendy S., Izard, Jacques, Cao, Yin, Song, Mingyang, Huttenhower, Curtis, Ogino, Shuji, Chan, Andrew T.
Publicado 2021

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

por Blanco-Míguez, Aitor, Beghini, Francesco, Cumbo, Fabio, McIver, Lauren J., Thompson, Kelsey N., Zolfo, Moreno, Manghi, Paolo, Dubois, Leonard, Huang, Kun D., Thomas, Andrew Maltez, Nickols, William A., Piccinno, Gianmarco, Piperni, Elisa, Punčochář, Michal, Valles-Colomer, Mireia, Tett, Adrian, Giordano, Francesca, Davies, Richard, Wolf, Jonathan, Berry, Sarah E., Spector, Tim D., Franzosa, Eric A., Pasolli, Edoardo, Asnicar, Francesco, Huttenhower, Curtis, Segata, Nicola
Publicado 2023

Metagenomic assessment of gut microbial communities and risk of severe COVID-19

por Nguyen, Long H., Okin, Daniel, Drew, David A., Battista, Vincent M., Jesudasen, Sirus J., Kuntz, Thomas M., Bhosle, Amrisha, Thompson, Kelsey N., Reinicke, Trenton, Lo, Chun-Han, Woo, Jacqueline E., Caraballo, Alexander, Berra, Lorenzo, Vieira, Jacob, Huang, Ching-Ying, Das Adhikari, Upasana, Kim, Minsik, Sui, Hui-Yu, Magicheva-Gupta, Marina, McIver, Lauren, Goldberg, Marcia B., Kwon, Douglas S., Huttenhower, Curtis, Chan, Andrew T., Lai, Peggy S.
Publicado 2023