A white-box approach to microarray probe response characterization: the BaFL pipeline

por Thompson, Kevin J, Deshmukh, Hrishikesh, Solka, Jeffrey L, Weller, Jennifer W
Publicado 2009

ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs

por Overall, Christopher C, Carr, D Andrew, Tabari, Ehsan S, Thompson, Kevin J, Weller, Jennifer W
Publicado 2011

The LO-BaFL method and ALS microarray expression analysis

por Baciu, Cristina, Thompson, Kevin J, Mougeot, Jean-Luc, Brooks, Benjamin R, Weller, Jennifer W
Publicado 2012

Frequency of MicroRNA Response Elements Identifies Pathologically Relevant Signaling Pathways in Triple-Negative Breast Cancer

por Nair, Asha A., Tang, Xiaojia, Thompson, Kevin J., Vedell, Peter T., Kalari, Krishna R., Subramanian, Subbaya
Publicado 2020

Circular RNAs and their associations with breast cancer subtypes

por Nair, Asha A., Niu, Nifang, Tang, Xiaojia, Thompson, Kevin J., Wang, Liewei, Kocher, Jean-Pierre, Subramanian, Subbaya, Kalari, Krishna R.
Publicado 2016

How to Stop the Bleed: First Care Provider Model for Developing Public Trauma Response Beyond Basic Hemorrhage Control

por Bobko, Joshua P., Badin, Dylan J., Danishgar, Leila, Bayhan, Kate, Thompson, Kevin J., Harris, William J., Baldridge, R. Todd, Fortuna, Gerald R.
Publicado 2020

BBBomics-Human Blood Brain Barrier Transcriptomics Hub

por Kalari, Krishna R., Thompson, Kevin J., Nair, Asha A., Tang, Xiaojia, Bockol, Matthew A., Jhawar, Navya, Swaminathan, Suresh K., Lowe, Val J., Kandimalla, Karunya K.
Publicado 2016

The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data

por Tang, Xiaojia, Baheti, Saurabh, Shameer, Khader, Thompson, Kevin J., Wills, Quin, Niu, Nifang, Holcomb, Ilona N., Boutet, Stephane C., Ramakrishnan, Ramesh, Kachergus, Jennifer M., Kocher, Jean-Pierre A., Weinshilboum, Richard M., Wang, Liewei, Thompson, E. Aubrey, Kalari, Krishna R.
Publicado 2014

Gene Expression, Single Nucleotide Variant and Fusion Transcript Discovery in Archival Material from Breast Tumors

por Norton, Nadine, Sun, Zhifu, Asmann, Yan W., Serie, Daniel J., Necela, Brian M., Bhagwate, Aditya, Jen, Jin, Eckloff, Bruce W., Kalari, Krishna R., Thompson, Kevin J., Carr, Jennifer M., Kachergus, Jennifer M., Geiger, Xochiquetzal J., Perez, Edith A., Thompson, E. Aubrey
Publicado 2013

Integration of multiomics data shows down regulation of mismatch repair and tubulin pathways in triple-negative chemotherapy-resistant breast tumors

por Tang, Xiaojia, Thompson, Kevin J., Kalari, Krishna R., Sinnwell, Jason P., Suman, Vera J., Vedell, Peter T., McLaughlin, Sarah A., Northfelt, Donald W., Aspitia, Alvaro Moreno, Gray, Richard J., Carter, Jodi M., Weinshilboum, Richard, Wang, Liewei, Boughey, Judy C., Goetz, Matthew P.
Publicado 2023

Characteristics and Spatially Defined Immune (micro)landscapes of Early-stage PD-L1–positive Triple-negative Breast Cancer

por Carter, Jodi M., Polley, Mei-Yin C., Leon-Ferre, Roberto A., Sinnwell, Jason, Thompson, Kevin J., Wang, Xue, Ma, Yaohua, Zahrieh, David, Kachergus, Jennifer M., Solanki, Malvika, Boughey, Judy C., Liu, Minetta C., Ingle, James N., Kalari, Krishna R., Couch, Fergus J., Thompson, E. Aubrey, Goetz, Matthew P.
Publicado 2021

A comprehensive analysis of breast cancer microbiota and host gene expression

por Thompson, Kevin J., Ingle, James N., Tang, Xiaojia, Chia, Nicholas, Jeraldo, Patricio R., Walther-Antonio, Marina R., Kandimalla, Karunya K., Johnson, Stephen, Yao, Janet Z., Harrington, Sean C., Suman, Vera J., Wang, Liewei, Weinshilboum, Richard L., Boughey, Judy C., Kocher, Jean-Pierre, Nelson, Heidi, Goetz, Matthew P., Kalari, Krishna R.
Publicado 2017

Tumor Sequencing and Patient-Derived Xenografts in the Neoadjuvant Treatment of Breast Cancer

por Goetz, Matthew P., Kalari, Krishna R., Suman, Vera J., Moyer, Ann M., Yu, Jia, Visscher, Daniel W., Dockter, Travis J., Vedell, Peter T., Sinnwell, Jason P., Tang, Xiaojia, Thompson, Kevin J., McLaughlin, Sarah A., Moreno-Aspitia, Alvaro, Copland, John A, Northfelt, Donald W., Gray, Richard J., Hunt, Katie, Conners, Amy, Weinshilboum, Richard, Wang, Liewei, Boughey, Judy C.
Publicado 2017

Luminal androgen receptor breast cancer subtype and investigation of the microenvironment and neoadjuvant chemotherapy response

por Thompson, Kevin J, Leon-Ferre, Roberto A, Sinnwell, Jason P, Zahrieh, David M, Suman, Vera J, Metzger, Filho Otto, Asad, Sarah, Stover, Daniel G, Carey, Lisa, Sikov, William M, Ingle, James N, Liu, Minetta C, Carter, Jodi M, Klee, Eric W, Weinshilboum, Richard M, Boughey, Judy C, Wang, Liewei, Couch, Fergus J, Goetz, Matthew P, Kalari, Krishna R
Publicado 2022

An Integrated Model of the Transcriptome of HER2-Positive Breast Cancer

por Kalari, Krishna R., Necela, Brian M., Tang, Xiaojia, Thompson, Kevin J., Lau, Melissa, Eckel-Passow, Jeanette E., Kachergus, Jennifer M., Anderson, S. Keith, Sun, Zhifu, Baheti, Saurabh, Carr, Jennifer M., Baker, Tiffany R., Barman, Poulami, Radisky, Derek C., Joseph, Richard W., McLaughlin, Sarah A., Chai, High-seng, Camille, Stephan, Rossell, David, Asmann, Yan W., Thompson, E. Aubrey, Perez, Edith A.
Publicado 2013

Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders

por Saffouri, George B., Shields-Cutler, Robin R., Chen, Jun, Yang, Yi, Lekatz, Heather R., Hale, Vanessa L., Cho, Janice M., Battaglioli, Eric J., Bhattarai, Yogesh, Thompson, Kevin J., Kalari, Krishna K., Behera, Gaurav, Berry, Jonathan C., Peters, Stephanie A., Patel, Robin, Schuetz, Audrey N., Faith, Jeremiah J., Camilleri, Michael, Sonnenburg, Justin L., Farrugia, Gianrico, Swann, Jonathan R., Grover, Madhusudan, Knights, Dan, Kashyap, Purna C.
Publicado 2019

Exome sequencing reveals frequent deleterious germline variants in cancer susceptibility genes in women with invasive breast cancer undergoing neoadjuvant chemotherapy

por Ellingson, Marissa S., Hart, Steven N., Kalari, Krishna R., Suman, Vera, Schahl, Kimberly A., Dockter, Travis J., Felten, Sara J., Sinnwell, Jason P., Thompson, Kevin J., Tang, Xiaojia, Vedell, Peter T., Barman, Poulami, Sicotte, Hugues, Eckel-Passow, Jeanette E., Northfelt, Donald W., Gray, Richard J., McLaughlin, Sarah A., Moreno-Aspitia, Alvaro, Ingle, James N., Moyer, Ann M., Visscher, Daniel W., Jones, Katie, Conners, Amy, McDonough, Michelle, Wieben, Eric D., Wang, Liewei, Weinshilboum, Richard, Boughey, Judy C., Goetz, Matthew P.
Publicado 2015

Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast c...

por Yu, Jia, Qin, Bo, Moyer, Ann M., Sinnwell, Jason P., Thompson, Kevin J., Copland, John A., Marlow, Laura A., Miller, James L., Yin, Ping, Gao, Bowen, Minter-Dykhouse, Katherine, Tang, Xiaojia, McLaughlin, Sarah A., Moreno-Aspitia, Alvaro, Schweitzer, Anthony, Lu, Yan, Hubbard, Jason, Northfelt, Donald W., Gray, Richard J., Hunt, Katie, Conners, Amy L., Suman, Vera J., Kalari, Krishna R., Ingle, James N., Lou, Zhenkun, Visscher, Daniel W., Weinshilboum, Richard, Boughey, Judy C., Goetz, Matthew P., Wang, Liewei
Publicado 2017

Correction to: Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoad...

por Yu, Jia, Qin, Bo, Moyer, Ann M., Sinnwell, Jason P., Thompson, Kevin J., Copland, John A., Marlow, Laura A., Miller, James L., Yin, Ping, Gao, Bowen, Minter-Dykhouse, Katherine, Tang, Xiaojia, McLaughlin, Sarah A., Moreno-Aspitia, Alvaro, Schweitzer, Anthony, Lu, Yan, Hubbard, Jason, Northfelt, Donald W., Gray, Richard J., Hunt, Katie, Conners, Amy L., Suman, Vera J., Kalari, Krishna R., Ingle, James N., Lou, Zhenkun, Visscher, Daniel W., Weinshilboum, Richard, Boughey, Judy C., Goetz, Matthew P., Wang, Liewei
Publicado 2021

Estrogen receptor beta repurposes EZH2 to suppress oncogenic NFκB/p65 signaling in triple negative breast cancer

por Aspros, Kirsten G. M., Carter, Jodi M., Hoskin, Tanya L., Suman, Vera J., Subramaniam, Malayannan, Emch, Michael J., Ye, Zhenqing, Sun, Zhifu, Sinnwell, Jason P., Thompson, Kevin J., Tang, Xiaojia, Rodman, Esther P. B., Wang, Xiyin, Nelson, Adam W., Chernukhin, Igor, Hamdan, Feda H., Bruinsma, Elizabeth S., Carroll, Jason S., Fernandez-Zapico, Martin E., Johnsen, Steven A., Kalari, Krishna R., Huang, Haojie, Leon-Ferre, Roberto A., Couch, Fergus J., Ingle, James N., Goetz, Matthew P., Hawse, John R.
Publicado 2022