Quality control of single-cell RNA-seq by SinQC

por Jiang, Peng, Thomson, James A., Stewart, Ron
Publicado 2016

Maternal High-Fiber Diet Protects Offspring against Type 2 Diabetes

por Toh, Huishi, Thomson, James A., Jiang, Peng
Publicado 2020

TimeMeter assesses temporal gene expression similarity and identifies differentially progressing genes

por Jiang, Peng, Chamberlain, Connie S, Vanderby, Ray, Thomson, James A, Stewart, Ron
Publicado 2020

Functional Assessment of Patient-Derived Retinal Pigment Epithelial Cells Edited by CRISPR/Cas9

por Foltz, Leah P., Howden, Sara E., Thomson, James A., Clegg, Dennis O.
Publicado 2018

RNA-Seq gene expression estimation with read mapping uncertainty

por Li, Bo, Ruotti, Victor, Stewart, Ron M., Thomson, James A., Dewey, Colin N.
Publicado 2010

Embryonic Stem Cell Growth Factors Regulate eIF2α Phosphorylation

por Friend, Kyle, Brooks, Hunter A., Propson, Nicholas E., Thomson, James A., Kimble, Judith
Publicado 2015

Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks

por Roy, Sushmita, Lagree, Stephen, Hou, Zhonggang, Thomson, James A., Stewart, Ron, Gasch, Audrey P.
Publicado 2013

OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data

por Leng, Ning, Choi, Jeea, Chu, Li-Fang, Thomson, James A., Kendziorski, Christina, Stewart, Ron
Publicado 2016

TF-Cluster: A pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM)

por Nie, Jeff, Stewart, Ron, Zhang, Hang, Thomson, James A, Ruan, Fang, Cui, Xiaoqi, Wei, Hairong
Publicado 2011

NANOG Is Multiply Phosphorylated and Directly Modified by ERK2 and CDK1 In Vitro

por Brumbaugh, Justin, Russell, Jason D., Yu, Pengzhi, Westphall, Michael S., Coon, Joshua J., Thomson, James A.
Publicado 2014

Expandable Arterial Endothelial Precursors from Human CD34(+) Cells Differ in Their Proclivity to Undergo an Endothelial-to-Mesenchymal Transition

por Miller, Auston Z., Satchie, Alexander, Tannenbaum, Alex P., Nihal, Aman, Thomson, James A., Vereide, David T.
Publicado 2018

Down-regulation of argininosuccinate synthetase is associated with cisplatin resistance in hepatocellular carcinoma cell lines: implications for PEGylated arginine deiminase combin...

por McAlpine, Jennifer A, Lu, Hsin-Tze, Wu, Katherine C, Knowles, Susan K, Thomson, James A
Publicado 2014

Evaluation of de novo transcriptome assemblies from RNA-Seq data

por Li, Bo, Fillmore, Nathanael, Bai, Yongsheng, Collins, Mike, Thomson, James A, Stewart, Ron, Dewey, Colin N
Publicado 2014

Characterization and target identification of a DNA aptamer that labels pluripotent stem cells

por Hou, Zhonggang, Meyer, Susanne, Propson, Nicholas E, Nie, Jeff, Jiang, Peng, Stewart, Ron, Thomson, James A
Publicado 2015

Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments

por Bacher, Rhonda, Leng, Ning, Chu, Li-Fang, Ni, Zijian, Thomson, James A., Kendziorski, Christina, Stewart, Ron
Publicado 2018

Assessment of Drug-Induced Toxicity Biomarkers in the Brain Microphysiological System (MPS) Using Targeted and Untargeted Molecular Profiling

por Mina, Sara G., Alaybeyoglu, Begum, Murphy, William L., Thomson, James A., Stokes, Cynthia L., Cirit, Murat
Publicado 2019

Transcriptomic clock predicts vascular changes of prodromal diabetic retinopathy

por Toh, Huishi, Smolentsev, Alexander, Sadjadi, Ryan, Clegg, Dennis, Yan, Jingqi, Stewart, Ron, Thomson, James A., Jiang, Peng
Publicado 2023

An Expandable, Inducible Hemangioblast State Regulated by Fibroblast Growth Factor

por Vereide, David T., Vickerman, Vernella, Swanson, Scott A., Chu, Li-Fang, McIntosh, Brian E., Thomson, James A.
Publicado 2014

Single Read and Paired End mRNA-Seq Illumina Libraries from 10 Nanograms Total RNA

por Sengupta, Srikumar, Bolin, Jennifer M., Ruotti, Victor, Nguyen, Bao Kim, Thomson, James A., Elwell, Angela L., Stewart, Ron
Publicado 2011

A human pluripotent stem cell platform for assessing developmental neural toxicity screening

por Hou, Zhonggang, Zhang, Jue, Schwartz, Michael P, Stewart, Ron, Page, C David, Murphy, William L, Thomson, James A
Publicado 2013