MethylationToActivity: a deep-learning framework that reveals promoter activity landscapes from DNA methylomes in individual tumors

por Williams, Justin, Xu, Beisi, Putnam, Daniel, Thrasher, Andrew, Li, Chunliang, Yang, Jun, Chen, Xiang
Publicado 2021

NetBID2 provides comprehensive hidden driver analysis

por Dong, Xinran, Ding, Liang, Thrasher, Andrew, Wang, Xinge, Liu, Jingjing, Pan, Qingfei, Rash, Jordan, Dhungana, Yogesh, Yang, Xu, Risch, Isabel, Li, Yuxin, Yan, Lei, Rusch, Michael, McLeod, Clay, Yan, Koon-Kiu, Peng, Junmin, Chi, Hongbo, Zhang, Jinghui, Yu, Jiyang
Publicado 2023

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data

por Tian, Liqing, Li, Yongjin, Edmonson, Michael N., Zhou, Xin, Newman, Scott, McLeod, Clay, Thrasher, Andrew, Liu, Yu, Tang, Bo, Rusch, Michael C., Easton, John, Ma, Jing, Davis, Eric, Trull, Austyn, Michael, J. Robert, Szlachta, Karol, Mullighan, Charles, Baker, Suzanne J., Downing, James R., Ellison, David W., Zhang, Jinghui
Publicado 2020

Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome

por Rusch, Michael, Nakitandwe, Joy, Shurtleff, Sheila, Newman, Scott, Zhang, Zhaojie, Edmonson, Michael N., Parker, Matthew, Jiao, Yuannian, Ma, Xiaotu, Liu, Yanling, Gu, Jiali, Walsh, Michael F., Becksfort, Jared, Thrasher, Andrew, Li, Yongjin, McMurry, James, Hedlund, Erin, Patel, Aman, Easton, John, Yergeau, Donald, Vadodaria, Bhavin, Tatevossian, Ruth G., Raimondi, Susana, Hedges, Dale, Chen, Xiang, Hagiwara, Kohei, McGee, Rose, Robinson, Giles W., Klco, Jeffery M., Gruber, Tanja A., Ellison, David W., Downing, James R, Zhang, Jinghui
Publicado 2018

Genomes for Kids: The Scope of Pathogenic Mutations in Pediatric Cancer Revealed by Comprehensive DNA and RNA Sequencing

por Newman, Scott, Nakitandwe, Joy, Kesserwan, Chimene A., Azzato, Elizabeth M., Wheeler, David A., Rusch, Michael, Shurtleff, Sheila, Hedges, Dale J., Hamilton, Kayla V., Foy, Scott G., Edmonson, Michael N., Thrasher, Andrew, Bahrami, Armita, Orr, Brent A., Klco, Jeffery M., Gu, Jiali, Harrison, Lynn W., Wang, Lu, Clay, Michael R., Ouma, Annastasia, Silkov, Antonina, Liu, Yanling, Zhang, Zhaojie, Liu, Yu, Brady, Samuel W., Zhou, Xin, Chang, Ti-Cheng, Pande, Manjusha, Davis, Eric, Becksfort, Jared, Patel, Aman, Wilkinson, Mark R., Rahbarinia, Delaram, Kubal, Manish, Maciaszek, Jamie L., Pastor, Victor, Knight, Jay, Gout, Alexander M., Wang, Jian, Gu, Zhaohui, Mullighan, Charles G., McGee, Rose B., Quinn, Emily A., Nuccio, Regina, Mostafavi, Roya, Gerhardt, Elsie L., Taylor, Leslie M., Valdez, Jessica M., Hines-Dowell, Stacy J., Pappo, Alberto S., Robinson, Giles, Johnson, Liza-Marie, Pui, Ching-Hon, Ellison, David W., Downing, James R., Zhang, Jinghui, Nichols, Kim E.
Publicado 2021