A fragment based method for modeling of protein segments into cryo-EM density maps

por Ismer, Jochen, Rose, Alexander S., Tiemann, Johanna K. S., Hildebrand, Peter W.
Publicado 2017

Voronoia4RNA—a database of atomic packing densities of RNA structures and their complexes

por Ismer, Jochen, Rose, Alexander S., Tiemann, Johanna K. S., Goede, Andrean, Rother, Kristian, Hildebrand, Peter W.
Publicado 2013

SL2: an interactive webtool for modeling of missing segments in proteins

por Ismer, Jochen, Rose, Alexander S., Tiemann, Johanna K. S., Goede, Andrean, Preissner, Robert, Hildebrand, Peter W.
Publicado 2016

HomolWat: a web server tool to incorporate ‘homologous’ water molecules into GPCR structures

por Mayol, Eduardo, García-Recio, Adrián, Tiemann, Johanna K S, Hildebrand, Peter W, Guixà-González, Ramon, Olivella, Mireia, Cordomí, Arnau
Publicado 2020

GPCR-SSFE 2.0—a fragment-based molecular modeling web tool for Class A G-protein coupled receptors

por Worth, Catherine L., Kreuchwig, Franziska, Tiemann, Johanna K.S., Kreuchwig, Annika, Ritschel, Michele, Kleinau, Gunnar, Hildebrand, Peter W., Krause, Gerd
Publicado 2017

MDsrv: visual sharing and analysis of molecular dynamics simulations

por Kampfrath, Michelle, Staritzbichler, René, Hernández, Guillermo Pérez, Rose, Alexander S, Tiemann, Johanna K S, Scheuermann, Gerik, Wiegreffe, Daniel, Hildebrand, Peter W
Publicado 2022

MDverse: Shedding Light on the Dark Matter of Molecular Dynamics Simulations

por Tiemann, Johanna K. S., Szczuka, Magdalena, Bouarroudj, Lisa, Oussaren, Mohamed, Garcia, Steven, Howard, Rebecca J., Delemotte, Lucie, Lindahl, Erik, Baaden, Marc, Lindorff-Larsen, Kresten, Chavent, Matthieu, Poulain, Pierre
Publicado 2023

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

por Koehler Leman, Julia, Lyskov, Sergey, Lewis, Steven M., Adolf-Bryfogle, Jared, Alford, Rebecca F., Barlow, Kyle, Ben-Aharon, Ziv, Farrell, Daniel, Fell, Jason, Hansen, William A., Harmalkar, Ameya, Jeliazkov, Jeliazko, Kuenze, Georg, Krys, Justyna D., Ljubetič, Ajasja, Loshbaugh, Amanda L., Maguire, Jack, Moretti, Rocco, Mulligan, Vikram Khipple, Nance, Morgan L., Nguyen, Phuong T., Ó Conchúir, Shane, Roy Burman, Shourya S., Samanta, Rituparna, Smith, Shannon T., Teets, Frank, Tiemann, Johanna K. S., Watkins, Andrew, Woods, Hope, Yachnin, Brahm J., Bahl, Christopher D., Bailey-Kellogg, Chris, Baker, David, Das, Rhiju, DiMaio, Frank, Khare, Sagar D., Kortemme, Tanja, Labonte, Jason W., Lindorff-Larsen, Kresten, Meiler, Jens, Schief, William, Schueler-Furman, Ora, Siegel, Justin B., Stein, Amelie, Yarov-Yarovoy, Vladimir, Kuhlman, Brian, Leaver-Fay, Andrew, Gront, Dominik, Gray, Jeffrey J., Bonneau, Richard
Publicado 2021