The tech for the next decade: promises and challenges in genome biology

por Hajirasouliha, Iman, Tilgner, Hagen U.
Publicado 2019

Promoter-like epigenetic signatures in exons displaying cell type-specific splicing

por Curado, Joao, Iannone, Camilla, Tilgner, Hagen, Valcárcel, Juan, Guigó, Roderic
Publicado 2015

Erratum to: Promoter-like epigenetic signatures in exons displaying cell type-specific splicing

por Curado, Joao, Iannone, Camilla, Tilgner, Hagen, Valcárcel, Juan, Guigó, Roderic
Publicado 2016

Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns

por Mikheenko, Alla, Prjibelski, Andrey D., Joglekar, Anoushka, Tilgner, Hagen U.
Publicado 2022

Role of six single nucleotide polymorphisms, risk factors in coronary disease, in OLR1 alternative splicing

por Tejedor, J. Ramón, Tilgner, Hagen, Iannone, Camilla, Guigó, Roderic, Valcárcel, Juan
Publicado 2015

ScisorWiz: visualizing differential isoform expression in single-cell long-read data

por Stein, Alexander N, Joglekar, Anoushka, Poon, Chi-Lam, Tilgner, Hagen U
Publicado 2022

Accurate Identification and Analysis of Human mRNA Isoforms Using Deep Long Read Sequencing

por Tilgner, Hagen, Raha, Debasish, Habegger, Lukas, Mohiuddin, Mohammed, Gerstein, Mark, Snyder, Michael
Publicado 2013

Getting the Entire Message: Progress in Isoform Sequencing

por Hardwick, Simon A., Joglekar, Anoushka, Flicek, Paul, Frankish, Adam, Tilgner, Hagen U.
Publicado 2019

cloudrnaSPAdes: Isoform assembly using bulk barcoded RNA sequencing data

por Meleshko, Dmitry, Prjbelski, Andrey D., Raiko, Mikhail, Tomescu, Alexandru I., Tilgner, Hagen, Hajirasouliha, Iman
Publicado 2023

Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome

por Tilgner, Hagen, Jahanbani, Fereshteh, Gupta, Ishaan, Collier, Paul, Wei, Eric, Rasmussen, Morten, Snyder, Michael
Publicado 2018

Absence of canonical active chromatin marks in developmentally regulated genes

por Pérez-Lluch, Sílvia, Blanco, Enrique, Tilgner, Hagen, Curado, Joao, Ruiz-Romero, Marina, Corominas, Montserrat, Guigó, Roderic
Publicado 2015

Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9

por Biegler, Matthew T., Fedrigo, Olivier, Collier, Paul, Mountcastle, Jacquelyn, Haase, Bettina, Tilgner, Hagen U., Jarvis, Erich D.
Publicado 2022

Accurate isoform discovery with IsoQuant using long reads

por Prjibelski, Andrey D., Mikheenko, Alla, Joglekar, Anoushka, Smetanin, Alexander, Jarroux, Julien, Lapidus, Alla L., Tilgner, Hagen U.
Publicado 2023

Schizophrenia is defined by cell-specific neuropathology and multiple neurodevelopmental mechanisms in patient-derived cerebral organoids

por Notaras, Michael, Lodhi, Aiman, Dündar, Friederike, Collier, Paul, Sayles, Nicole M., Tilgner, Hagen, Greening, David, Colak, Dilek
Publicado 2021

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

por Tilgner, Hagen, Knowles, David G., Johnson, Rory, Davis, Carrie A., Chakrabortty, Sudipto, Djebali, Sarah, Curado, João, Snyder, Michael, Gingeras, Thomas R., Guigó, Roderic
Publicado 2012

Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans

por Cenik, Can, Cenik, Elif Sarinay, Byeon, Gun W., Grubert, Fabian, Candille, Sophie I., Spacek, Damek, Alsallakh, Bilal, Tilgner, Hagen, Araya, Carlos L., Tang, Hua, Ricci, Emiliano, Snyder, Michael P.
Publicado 2015

Targeted, High-Resolution RNA Sequencing of Non-coding Genomic Regions Associated With Neuropsychiatric Functions

por Hardwick, Simon A., Bassett, Samuel D., Kaczorowski, Dominik, Blackburn, James, Barton, Kirston, Bartonicek, Nenad, Carswell, Shaun L., Tilgner, Hagen U., Loy, Clement, Halliday, Glenda, Mercer, Tim R., Smith, Martin A., Mattick, John S.
Publicado 2019

Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development

por Joglekar, Anoushka, Hu, Wen, Zhang, Bei, Narykov, Oleksandr, Diekhans, Mark, Balacco, Jennifer, Ndhlovu, Lishomwa C, Milner, Teresa A, Fedrigo, Olivier, Jarvis, Erich D, Sheynkman, Gloria, Korkin, Dmitry, Ross, M. Elizabeth, Tilgner, Hagen U.
Publicado 2023

Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis

por Sahraeian, Sayed Mohammad Ebrahim, Mohiyuddin, Marghoob, Sebra, Robert, Tilgner, Hagen, Afshar, Pegah T., Au, Kin Fai, Bani Asadi, Narges, Gerstein, Mark B., Wong, Wing Hung, Snyder, Michael P., Schadt, Eric, Lam, Hugo Y. K.
Publicado 2017

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

por Derrien, Thomas, Johnson, Rory, Bussotti, Giovanni, Tanzer, Andrea, Djebali, Sarah, Tilgner, Hagen, Guernec, Gregory, Martin, David, Merkel, Angelika, Knowles, David G., Lagarde, Julien, Veeravalli, Lavanya, Ruan, Xiaoan, Ruan, Yijun, Lassmann, Timo, Carninci, Piero, Brown, James B., Lipovich, Leonard, Gonzalez, Jose M., Thomas, Mark, Davis, Carrie A., Shiekhattar, Ramin, Gingeras, Thomas R., Hubbard, Tim J., Notredame, Cedric, Harrow, Jennifer, Guigó, Roderic
Publicado 2012