Core Genome MLST for Source Attribution of Campylobacter coli

por Harrison, Lucas, Mukherjee, Sampa, Hsu, Chih-Hao, Young, Shenia, Strain, Errol, Zhang, Qijing, Tillman, Glenn E., Morales, Cesar, Haro, Jovita, Zhao, Shaohua
Publicado 2021

Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology

por Taylor, Tonya L., Volkening, Jeremy D., DeJesus, Eric, Simmons, Mustafa, Dimitrov, Kiril M., Tillman, Glenn E., Suarez, David L., Afonso, Claudio L.
Publicado 2019

Long-Read Sequencing Reveals Evolution and Acquisition of Antimicrobial Resistance and Virulence Genes in Salmonella enterica

por Li, Cong, Tyson, Gregory H., Hsu, Chih-Hao, Harrison, Lucas, Strain, Errol, Tran, Thu-Thuy, Tillman, Glenn E., Dessai, Uday, McDermott, Patrick F., Zhao, Shaohua
Publicado 2021

Use of Large-Scale Genomics to Identify the Role of Animals and Foods as Potential Sources of Extraintestinal Pathogenic Escherichia coli That Cause Human Illness

por Harrison, Lucas, Tyson, Gregory H., Strain, Errol, Lindsey, Rebecca L., Strockbine, Nancy, Ceric, Olgica, Fortenberry, Gamola Z., Harris, Beth, Shaw, Sheryl, Tillman, Glenn, Zhao, Shaohua, Dessai, Uday
Publicado 2022

The Poultry-Associated Microbiome: Network Analysis and Farm-to-Fork Characterizations

por Oakley, Brian B., Morales, Cesar A., Line, J., Berrang, Mark E., Meinersmann, Richard J., Tillman, Glenn E., Wise, Mark G., Siragusa, Gregory R., Hiett, Kelli L., Seal, Bruce S.
Publicado 2013

Genomic Analysis of Emerging Florfenicol-Resistant Campylobacter coli Isolated from the Cecal Contents of Cattle in the United States

por Zhao, Shaohua, Mukherjee, Sampa, Hsu, Chih-Hao, Young, Shenia, Li, Cong, Tate, Heather, Morales, Cesar A., Haro, Jovita, Thitaram, Sutawee, Tillman, Glenn E., Dessai, Uday, McDermott, Patrick
Publicado 2019

Complete Genome Sequence of Multidrug-Resistant Salmonella enterica Serovar I 4,[5],12:i:− 2015 U.S. Pork Outbreak Isolate USDA15WA-1

por Bearson, Bradley L., Trachsel, Julian M., Holman, Devin B., Brunelle, Brian W., Sivasankaran, Sathesh K., Simmons, Mustafa, Wasilenko, Jamie, Tillman, Glenn, Johnston, John J., Bearson, Shawn M. D.
Publicado 2019

Carriage and Gene Content Variability of the pESI-Like Plasmid Associated with Salmonella Infantis Recently Established in United States Poultry Production

por McMillan, Elizabeth A., Wasilenko, Jamie L., Tagg, Kaitlin A., Chen, Jessica C., Simmons, Mustafa, Gupta, Sushim K., Tillman, Glenn E., Folster, Jason, Jackson, Charlene R., Frye, Jonathan G.
Publicado 2020

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

por Timme, Ruth E., Rand, Hugh, Shumway, Martin, Trees, Eija K., Simmons, Mustafa, Agarwala, Richa, Davis, Steven, Tillman, Glenn E., Defibaugh-Chavez, Stephanie, Carleton, Heather A., Klimke, William A., Katz, Lee S.
Publicado 2017

AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

por Feldgarden, Michael, Brover, Vyacheslav, Gonzalez-Escalona, Narjol, Frye, Jonathan G., Haendiges, Julie, Haft, Daniel H., Hoffmann, Maria, Pettengill, James B., Prasad, Arjun B., Tillman, Glenn E., Tyson, Gregory H., Klimke, William
Publicado 2021

Antimicrobial Resistance Genes, Cassettes, and Plasmids Present in Salmonella enterica Associated With United States Food Animals

por McMillan, Elizabeth A., Gupta, Sushim K., Williams, Laura E., Jové, Thomas, Hiott, Lari M., Woodley, Tiffanie A., Barrett, John B., Jackson, Charlene R., Wasilenko, Jamie L., Simmons, Mustafa, Tillman, Glenn E., McClelland, Michael, Frye, Jonathan G.
Publicado 2019