gEVAL — a web-based browser for evaluating genome assemblies

por Chow, William, Brugger, Kim, Caccamo, Mario, Sealy, Ian, Torrance, James, Howe, Kerstin
Publicado 2016

Significantly improving the quality of genome assemblies through curation

por Howe, Kerstin, Chow, William, Collins, Joanna, Pelan, Sarah, Pointon, Damon-Lee, Sims, Ying, Torrance, James, Tracey, Alan, Wood, Jonathan
Publicado 2021

caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts

por Moffitt, Richard A, Yin-Goen, Qiqin, Stokes, Todd H, Parry, R Mitchell, Torrance, James H, Phan, John H, Young, Andrew N, Wang, May D
Publicado 2011

MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms

por Holliday, Gemma L., Almonacid, Daniel E., Bartlett, Gail J., O'Boyle, Noel M., Torrance, James W., Murray-Rust, Peter, Mitchell, John B. O., Thornton, Janet M.
Publicado 2007

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

por Uliano-Silva, Marcela, Ferreira, João Gabriel R. N., Krasheninnikova, Ksenia, Formenti, Giulio, Abueg, Linelle, Torrance, James, Myers, Eugene W., Durbin, Richard, Blaxter, Mark, McCarthy, Shane A.
Publicado 2023

A Chromosome-Level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus)

por Sætre, Camilla Lo Cascio, Eroukhmanoff, Fabrice, Rönkä, Katja, Kluen, Edward, Thorogood, Rose, Torrance, James, Tracey, Alan, Chow, William, Pelan, Sarah, Howe, Kerstin, Jakobsen, Kjetill S, Tørresen, Ole K
Publicado 2021

Caecilian Genomes Reveal the Molecular Basis of Adaptation and Convergent Evolution of Limblessness in Snakes and Caecilians

por Ovchinnikov, Vladimir, Uliano-Silva, Marcela, Wilkinson, Mark, Wood, Jonathan, Smith, Michelle, Oliver, Karen, Sims, Ying, Torrance, James, Suh, Alexander, McCarthy, Shane A, Durbin, Richard, O’Connell, Mary J
Publicado 2023

A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia illucens L.)

por Generalovic, Tomas N, McCarthy, Shane A, Warren, Ian A, Wood, Jonathan M D, Torrance, James, Sims, Ying, Quail, Michael, Howe, Kerstin, Pipan, Miha, Durbin, Richard, Jiggins, Chris D
Publicado 2021

The genome sequence of the channel bull blenny, Cottoperca gobio (Günther, 1861)

por Bista, Iliana, McCarthy, Shane A., Wood, Jonathan, Ning, Zemin, Detrich III, H. William, Desvignes, Thomas, Postlethwait, John, Chow, William, Howe, Kerstin, Torrance, James, Smith, Michelle, Oliver, Karen, Miska, Eric A., Durbin, Richard
Publicado 2020

The complete genome sequence of Eimeria tenella (Tyzzer 1929), a common gut parasite of chickens

por Aunin, Eerik, Böhme, Ulrike, Blake, Damer, Dove, Alexander, Smith, Michelle, Corton, Craig, Oliver, Karen, Betteridge, Emma, Quail, Michael A., McCarthy, Shane A., Wood, Jonathan, Tracey, Alan, Torrance, James, Sims, Ying, Howe, Kerstin, Challis, Richard, Berriman, Matthew, Reid, Adam
Publicado 2021

The genome sequence of the eastern grey squirrel, Sciurus carolinensis Gmelin, 1788

por Mead, Dan, Fingland, Kathryn, Cripps, Rachel, Portela Miguez, Roberto, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Quail, Michael A., McCarthy, Shane A., Howe, Kerstin, Sims, Ying, Torrance, James, Tracey, Alan, Challis, Richard, Durbin, Richard, Blaxter, Mark
Publicado 2020

The genome sequence of the malaria mosquito, Anopheles funestus, Giles, 1900

por Ayala, Diego, Akone-Ella, Ousman, Kengne, Pierre, Johnson, Harriet, Heaton, Haynes, Collins, Joanna, Krasheninnikova, Ksenia, Pelan, Sarah, Pointon, Damon-Lee, Sims, Ying, Torrance, James, Tracey, Alan, Uliano-Silva, Marcela, von Wyschetzki, Katharina, Wood, Jonathan, McCarthy, Shane, Neafsey, Daniel, Makunin, Alex, Lawniczak, Mara
Publicado 2023

The gene-rich genome of the scallop Pecten maximus

por Kenny, Nathan J, McCarthy, Shane A, Dudchenko, Olga, James, Katherine, Betteridge, Emma, Corton, Craig, Dolucan, Jale, Mead, Dan, Oliver, Karen, Omer, Arina D, Pelan, Sarah, Ryan, Yan, Sims, Ying, Skelton, Jason, Smith, Michelle, Torrance, James, Weisz, David, Wipat, Anil, Aiden, Erez L, Howe, Kerstin, Williams, Suzanne T
Publicado 2020

The genome sequence of the European golden eagle, Aquila chrysaetos chrysaetos Linnaeus 1758

por Mead, Dan, Ogden, Rob, Meredith, Anna, Peniche, Gabriela, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Holmes, Nadine, Wright, Victoria, Loose, Matt, Quail, Michael A., McCarthy, Shane A., Howe, Kerstin, Chow, William, Torrance, James, Collins, Joanna, Challis, Richard, Durbin, Richard, Blaxter, Mark
Publicado 2021

The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758

por Carpenter, Angus I., Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Quail, Michael A., McCarthy, Shane A., Uliano Da Silva, Marcela, Howe, Kerstin, Torrance, James, Wood, Jonathan, Pelan, Sarah, Sims, Ying, Tricomi, Francesca Floriana, Challis, Richard, Threlfall, Jonathan, Mead, Daniel, Blaxter, Mark
Publicado 2021

The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758

por Mead, Dan, Hailer, Frank, Chadwick, Elisabeth, Portela Miguez, Roberto, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale Doulcan, Dudchenko, Olga, Omer, Arina, Weisz, David, Lieberman Aiden, Erez, McCarthy, Shane, Howe, Kerstin, Sims, Ying, Torrance, James, Tracey, Alan, Challis, Richard, Durbin, Richard, Blaxter, Mark
Publicado 2020

The genome sequence of the Norway rat, Rattus norvegicus Berkenhout 1769

por Howe, Kerstin, Dwinell, Melinda, Shimoyama, Mary, Corton, Craig, Betteridge, Emma, Dove, Alexander, Quail, Michael A., Smith, Michelle, Saba, Laura, Williams, Robert W., Chen, Hao, Kwitek, Anne E., McCarthy, Shane A., Uliano-Silva, Marcela, Chow, William, Tracey, Alan, Torrance, James, Sims, Ying, Challis, Richard, Threlfall, Jonathan, Blaxter, Mark
Publicado 2021

A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck)

por Mueller, Ralf C, Ellström, Patrik, Howe, Kerstin, Uliano-Silva, Marcela, Kuo, Richard I, Miedzinska, Katarzyna, Warr, Amanda, Fedrigo, Olivier, Haase, Bettina, Mountcastle, Jacquelyn, Chow, William, Torrance, James, Wood, Jonathan M D, Järhult, Josef D, Naguib, Mahmoud M, Olsen, Björn, Jarvis, Erich D, Smith, Jacqueline, Eöry, Lél, Kraus, Robert H S
Publicado 2021

Genomics of cold adaptations in the Antarctic notothenioid fish radiation

por Bista, Iliana, Wood, Jonathan M. D., Desvignes, Thomas, McCarthy, Shane A., Matschiner, Michael, Ning, Zemin, Tracey, Alan, Torrance, James, Sims, Ying, Chow, William, Smith, Michelle, Oliver, Karen, Haggerty, Leanne, Salzburger, Walter, Postlethwait, John H., Howe, Kerstin, Clark, Melody S., William Detrich, H., Christina Cheng, C.-H., Miska, Eric A., Durbin, Richard
Publicado 2023

The genome sequence of the brown trout, Salmo trutta Linnaeus 1758

por Hansen, Tom, Fjelldal, Per Gunnar, Lien, Sigbjørn, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Fedrigo, Olivier, Mountcastle, Jacquelyn, Jarvis, Erich, McCarthy, Shane A., Chow, William, Howe, Kerstin, Torrance, James, Wood, Jonathan, Sims, Ying, Haggerty, Leanne, Challis, Richard, Threlfall, Jonathan, Mead, Daniel, Durbin, Richard, Blaxter, Mark
Publicado 2021