CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator

por Touré, Vasundra, Zobolas, John, Kuiper, Martin, Vercruysse, Steven
Publicado 2021

UniBioDicts: Unified access to Biological Dictionaries

por Zobolas, John, Touré, Vasundra, Kuiper, Martin, Vercruysse, Steven
Publicado 2021

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

por Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
Publicado 2018

The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling

por Touré, Vasundra, Flobak, Åsmund, Niarakis, Anna, Vercruysse, Steven, Kuiper, Martin
Publicado 2020

Exploring the evolution of biochemical models at the network level

por Gebhardt, Tom, Touré, Vasundra, Waltemath, Dagmar, Wolkenhauer, Olaf, Scharm, Martin
Publicado 2022

GraphML-SBGN bidirectional converter for metabolic networks

por Balaur, Irina, Roy, Ludovic, Touré, Vasundra, Mazein, Alexander, Auffray, Charles
Publicado 2022

A Middle-Out Modeling Strategy to Extend a Colon Cancer Logical Model Improves Drug Synergy Predictions in Epithelial-Derived Cancer Cell Lines

por Tsirvouli, Eirini, Touré, Vasundra, Niederdorfer, Barbara, Vázquez, Miguel, Flobak, Åsmund, Kuiper, Martin
Publicado 2020

Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction

por Niederdorfer, Barbara, Touré, Vasundra, Vazquez, Miguel, Thommesen, Liv, Kuiper, Martin, Lægreid, Astrid, Flobak, Åsmund
Publicado 2020

A National, Semantic-Driven, Three-Pillar Strategy to Enable Health Data Secondary Usage Interoperability for Research Within the Swiss Personalized Health Network: Methodological...

por Gaudet-Blavignac, Christophe, Raisaro, Jean Louis, Touré, Vasundra, Österle, Sabine, Crameri, Katrin, Lovis, Christian
Publicado 2021

Evolution of computational models in BioModels Database and the Physiome Model Repository

por Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
Publicado 2018

STON: exploring biological pathways using the SBGN standard and graph databases

por Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Publicado 2016

Systems biology graphical notation markup language (SBGNML) version 0.3

por Bergmann, Frank T., Czauderna, Tobias, Dogrusoz, Ugur, Rougny, Adrien, Dräger, Andreas, Touré, Vasundra, Mazein, Alexander, Blinov, Michael L., Luna, Augustin
Publicado 2020

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks

por Rougny, Adrien, Touré, Vasundra, Albanese, John, Waltemath, Dagmar, Shirshov, Denis, Sorokin, Anatoly, Bader, Gary D, Blinov, Michael L, Mazein, Alexander
Publicado 2021

FAIRification of health-related data using semantic web technologies in the Swiss Personalized Health Network

por Touré, Vasundra, Krauss, Philip, Gnodtke, Kristin, Buchhorn, Jascha, Unni, Deepak, Horki, Petar, Raisaro, Jean Louis, Kalt, Katie, Teixeira, Daniel, Crameri, Katrin, Österle, Sabine
Publicado 2023

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0

por Rougny, Adrien, Touré, Vasundra, Moodie, Stuart, Balaur, Irina, Czauderna, Tobias, Borlinghaus, Hanna, Dogrusoz, Ugur, Mazein, Alexander, Dräger, Andreas, Blinov, Michael L., Villéger, Alice, Haw, Robin, Demir, Emek, Mi, Huaiyu, Sorokin, Anatoly, Schreiber, Falk, Luna, Augustin
Publicado 2019

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST)

por Touré, Vasundra, Vercruysse, Steven, Acencio, Marcio Luis, Lovering, Ruth C, Orchard, Sandra, Bradley, Glyn, Casals-Casas, Cristina, Chaouiya, Claudine, del-Toro, Noemi, Flobak, Åsmund, Gaudet, Pascale, Hermjakob, Henning, Hoyt, Charles Tapley, Licata, Luana, Lægreid, Astrid, Mungall, Christopher J, Niknejad, Anne, Panni, Simona, Perfetto, Livia, Porras, Pablo, Pratt, Dexter, Saez-Rodriguez, Julio, Thieffry, Denis, Thomas, Paul D, Türei, Dénes, Kuiper, Martin
Publicado 2020

Harmonizing semantic annotations for computational models in biology

por Neal, Maxwell Lewis, König, Matthias, Nickerson, David, Mısırlı, Göksel, Kalbasi, Reza, Dräger, Andreas, Atalag, Koray, Chelliah, Vijayalakshmi, Cooling, Michael T, Cook, Daniel L, Crook, Sharon, de Alba, Miguel, Friedman, Samuel H, Garny, Alan, Gennari, John H, Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Myers, Chris, Olivier, Brett G, Sauro, Herbert M, Scharm, Martin, Snoep, Jacky L, Touré, Vasundra, Wipat, Anil, Wolkenhauer, Olaf, Waltemath, Dagmar
Publicado 2018

Toward community standards and software for whole-cell modeling

por Waltemath, Dagmar, Karr, Jonathan R., Bergmann, Frank T., Chelliah, Vijayalakshmi, Hucka, Michael, Krantz, Marcus, Liebermeister, Wolfram, Mendes, Pedro, Myers, Chris J., Pir, Pinar, Alaybeyoglu, Begum, Aranganathan, Naveen K, Baghalian, Kambiz, Bittig, Arne T., Pinto Burke, Paulo E., Cantarelli, Matteo, Chew, Yin Hoon, Costa, Rafael S., Cursons, Joseph, Czauderna, Tobias, Goldberg, Arthur P., Gómez, Harold F., Hahn, Jens, Hameri, Tuure, Hernandez Gardiol, Daniel F., Kazakiewicz, Denis, Kiselev, Ilya, Knight-Schrijver, Vincent, Knüpfer, Christian, König, Matthias, Lee, Daewon, Lloret-Villas, Audald, Mandrik, Nikita, Medley, J. Kyle, Moreau, Bertrand, Naderi-Meshkin, Hojjat, Palaniappan, Sucheendra K., Priego-Espinosa, Daniel, Scharm, Martin, Sharma, Mahesh, Smallbone, Kieran, Stanford, Natalie J., Song, Je-Hoon, Theile, Tom, Tokic, Milenko, Tomar, Namrata, Touré, Vasundra, Uhlendorf, Jannis, Varusai, Thawfeek M, Watanabe, Leandro H., Wendland, Florian, Wolfien, Markus, Yurkovich, James T., Zhu, Yan, Zardilis, Argyris, Zhukova, Anna, Schreiber, Falk
Publicado 2016