M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

por Treangen, Todd J, Messeguer, Xavier
Publicado 2006

Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone

por Treangen, Todd J, Phillippy, Adam M
Publicado 2012

Bakdrive: identifying a minimum set of bacterial species driving interactions across multiple microbial communities

por Wang, Qi, Nute, Michael, Treangen, Todd J
Publicado 2023

Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes

por Treangen, Todd J., Rocha, Eduardo P. C.
Publicado 2011

It takes guts to learn: machine learning techniques for disease detection from the gut microbiome

por Curry, Kristen D., Nute, Michael G., Treangen, Todd J.
Publicado 2021

Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation

por Kille, Bryce, Garrison, Erik, Treangen, Todd J, Phillippy, Adam M
Publicado 2023

Traumatic Brain Injury in Mice Induces Acute Bacterial Dysbiosis Within the Fecal Microbiome

por Treangen, Todd J., Wagner, Justin, Burns, Mark P., Villapol, Sonia
Publicado 2018

The impact of the neisserial DNA uptake sequences on genome evolution and stability

por Treangen, Todd J, Ambur, Ole Herman, Tonjum, Tone, Rocha, Eduardo PC
Publicado 2008

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

por Treangen, Todd J, Ondov, Brian D, Koren, Sergey, Phillippy, Adam M
Publicado 2014

Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers

por Davison, Michelle, Treangen, Todd J., Koren, Sergey, Pop, Mihai, Bhaya, Devaki
Publicado 2016

RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification

por Nasko, Daniel J., Koren, Sergey, Phillippy, Adam M., Treangen, Todd J.
Publicado 2018

Multiple genome alignment in the telomere-to-telomere assembly era

por Kille, Bryce, Balaji, Advait, Sedlazeck, Fritz J., Nute, Michael, Treangen, Todd J.
Publicado 2022

MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

por Treangen, Todd J, Koren, Sergey, Astrovskaya, Irina, Sommer, Dan, Liu, Bo, Pop, Mihai
Publicado 2011

Automated ensemble assembly and validation of microbial genomes

por Koren, Sergey, Treangen, Todd J, Hill, Christopher M, Pop, Mihai, Phillippy, Adam M
Publicado 2014

Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment

por Fu, Yilei, Mahmoud, Medhat, Muraliraman, Viginesh Vaibhav, Sedlazeck, Fritz J, Treangen, Todd J
Publicado 2021

Fecal Microbiota Transplantation Derived from Alzheimer’s Disease Mice Worsens Brain Trauma Outcomes in Wild-Type Controls

por Soriano, Sirena, Curry, Kristen, Wang, Qi, Chow, Elsbeth, Treangen, Todd J., Villapol, Sonia
Publicado 2022

Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru

por Treangen, Todd J., Schoeler, George, Phillippy, Adam M., Bergman, Nicholas H., Turell, Michael J.
Publicado 2016

PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment

por Wang, Qi, Kille, Bryce, Liu, Tian Rui, Elworth, R. A. Leo, Treangen, Todd J.
Publicado 2021

Rescuing Low Frequency Variants within Intra-Host Viral Populations directly from Oxford Nanopore sequencing data

por Liu, Yunxi, Kearney, Joshua, Mahmoud, Medhat, Kille, Bryce, Sedlazeck, Fritz J., Treangen, Todd J.
Publicado 2021

Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data

por Liu, Yunxi, Kearney, Joshua, Mahmoud, Medhat, Kille, Bryce, Sedlazeck, Fritz J., Treangen, Todd J.
Publicado 2022