Analysis of Expression Patterns: The Scope of the Problem, the Problem of Scope

por Chen, Yidong, Yakhini, Zohar, Ben-Dor, Amir, Dougherty, Edward, Trent, Jeffrey M., Bittner, Michael
Publicado 2001

The BioIntelligence Framework: a new computational platform for biomedical knowledge computing

por Farley, Toni, Kiefer, Jeff, Lee, Preston, Von Hoff, Daniel, Trent, Jeffrey M, Colbourn, Charles, Mousses, Spyro
Publicado 2013

The identification of trans-associations between prostate cancer GWAS SNPs and RNA expression differences in tumor-adjacent stroma

por Chen, Xin, McClelland, Michael, Jia, Zhenyu, Rahmatpanah, Farah B., Sawyers, Anne, Trent, Jeffrey, Duggan, David, Mercola, Dan
Publicado 2015

Assessing Combinational Drug Efficacy in Cancer Cells by Using Image-based Dynamic Response Analysis

por Sima, Chao, Hua, Jianping, Cypert, Milana, Miller, Tasha, Wilson-Robles, Heather M., Trent, Jeffrey M., Dougherty, Edward R., Bittner, Michael L.
Publicado 2016

Development of potent autophagy inhibitors that sensitize oncogenic BRAF V600E mutant melanoma tumor cells to vemurafenib

por Goodall, Megan L, Wang, Tong, Martin, Katie R, Kortus, Matthew G, Kauffman, Audra L, Trent, Jeffrey M, Gately, Stephen, MacKeigan, Jeffrey P
Publicado 2014

Correlates of clinical benefit from immunotherapy and targeted therapy in metastatic renal cell carcinoma: comprehensive genomic and transcriptomic analysis

por Dizman, Nazli, Lyou, Yung, Salgia, Nicholas, Bergerot, Paulo Gustavo, Hsu, JoAnn, Enriquez, Daniel, Izatt, Tyler, Trent, Jeffrey M, Byron, Sara, Pal, Sumanta
Publicado 2020

Randomized trial assessing impact of probiotic supplementation on gut microbiome and clinical outcome from targeted therapy in metastatic renal cell carcinoma

por Dizman, Nazli, Hsu, JoAnn, Bergerot, Paulo G., Gillece, John D., Folkerts, Megan, Reining, Lauren, Trent, Jeffrey, Highlander, Sarah K., Pal, Sumanta K.
Publicado 2020

A BAP1 Mutation in a Danish Family Predisposes to Uveal Melanoma and Other Cancers

por Aoude, Lauren G., Wadt, Karin, Bojesen, Anders, Crüger, Dorthe, Borg, Åke, Trent, Jeffrey M., Brown, Kevin M., Gerdes, Anne-Marie, Jönsson, Göran, Hayward, Nicholas K.
Publicado 2013

Molecular Guided Therapy Provides Sustained Clinical Response in Refractory Choroid Plexus Carcinoma

por Cornelius, Albert, Foley, Jessica, Bond, Jeffrey, Nagulapally, Abhinav B., Steinbrecher, Julie, Hendricks, William P. D., Rich, Maria, Yendrembam, Sangeeta, Bergendahl, Genevieve, Trent, Jeffrey M., Sholler, Giselle S.
Publicado 2017

Feasibility of circulating tumor DNA analysis in dogs with naturally occurring malignant and benign splenic lesions

por Favaro, Patricia Filippsen, Stewart, Samuel D., McDonald, Bradon R., Cawley, Jacob, Contente-Cuomo, Tania, Wong, Shukmei, Hendricks, William P. D., Trent, Jeffrey M., Khanna, Chand, Murtaza, Muhammed
Publicado 2022

Characterization of X Chromosome Inactivation Using Integrated Analysis of Whole-Exome and mRNA Sequencing

por Szelinger, Szabolcs, Malenica, Ivana, Corneveaux, Jason J., Siniard, Ashley L., Kurdoglu, Ahmet A., Ramsey, Keri M., Schrauwen, Isabelle, Trent, Jeffrey M., Narayanan, Vinodh, Huentelman, Matthew J., Craig, David W.
Publicado 2014

Analysis of variability in high throughput screening data: applications to melanoma cell lines and drug responses

por Ding, Kuan-Fu, Finlay, Darren, Yin, Hongwei, Hendricks, William P.D., Sereduk, Chris, Kiefer, Jeffrey, Sekulic, Aleksandar, LoRusso, Patricia M., Vuori, Kristiina, Trent, Jeffrey M., Schork, Nicholas J.
Publicado 2017

Network Rewiring in Cancer: Applications to Melanoma Cell Lines and the Cancer Genome Atlas Patients

por Ding, Kuan-Fu, Finlay, Darren, Yin, Hongwei, Hendricks, William P. D., Sereduk, Chris, Kiefer, Jeffrey, Sekulic, Aleksandar, LoRusso, Patricia M., Vuori, Kristiina, Trent, Jeffrey M., Schork, Nicholas J.
Publicado 2018

The value of comprehensive genomic sequencing to maximize the identification of clinically actionable alterations in advanced cancer patients: a case series

por Drenner, Kevin, Basu, Gargi D., Goodman, Laurie J., Ozols, Audrey A., LoBello, Janine R., Royce, Thomas, Gordon, Michael S., Borazanci, Erkut H., Steinbach, Margaux A., Trent, Jeffrey, Sharma, Sunil
Publicado 2021

Addendum: The value of comprehensive genomic sequencing to maximize the identification of clinically actionable alterations in advanced cancer patients: a case series

por Drenner, Kevin, Basu, Gargi D., Goodman, Laurie J., Ozols, Audrey A., LoBello, Janine R., Royce, Thomas, Gordon, Michael S., Borazanci, Erkut H., Steinbach, Margaux A., Trent, Jeffrey, Sharma, Sunil
Publicado 2022

Synthetic lethal RNAi screening identifies sensitizing targets for gemcitabine therapy in pancreatic cancer

por Azorsa, David O, Gonzales, Irma M, Basu, Gargi D, Choudhary, Ashish, Arora, Shilpi, Bisanz, Kristen M, Kiefer, Jeffrey A, Henderson, Meredith C, Trent, Jeffrey M, Von Hoff, Daniel D, Mousses, Spyro
Publicado 2009

Assessment of PALB2 as a Candidate Melanoma Susceptibility Gene

por Aoude, Lauren G., Xu, Mai, Zhao, Zhen Zhen, Kovacs, Michael, Palmer, Jane M., Johansson, Peter, Symmons, Judith, Trent, Jeffrey M., Martin, Nicholas G., Montgomery, Grant W., Brown, Kevin M., Hayward, Nicholas K.
Publicado 2014

Nonlinear mixed effects dose response modeling in high throughput drug screens: application to melanoma cell line analysis

por Ding, Kuan-Fu, Petricoin, Emanuel F., Finlay, Darren, Yin, Hongwei, Hendricks, William P.D., Sereduk, Chris, Kiefer, Jeffrey, Sekulic, Aleksandar, LoRusso, Patricia M., Vuori, Kristiina, Trent, Jeffrey M., Schork, Nicholas J.
Publicado 2017

Random DNA fragmentation allows detection of single-copy, single-exon alterations of copy number by oligonucleotide array CGH in clinical FFPE samples

por Hostetter, Galen, Kim, Su Young, Savage, Stephanie, Gooden, Gerald C., Barrett, Michael, Zhang, Jian, Alla, Lalitamba, Watanabe, April, Einspahr, Janine, Prasad, Anil, Nickoloff, Brian J., Carpten, John, Trent, Jeffrey, Alberts, David, Bittner, Michael
Publicado 2010

Improved methods for RNAseq-based alternative splicing analysis

por Halperin, Rebecca F., Hegde, Apurva, Lang, Jessica D., Raupach, Elizabeth A., Legendre, Christophe, Liang, Winnie S., LoRusso, Patricia M., Sekulic, Aleksandar, Sosman, Jeffrey A., Trent, Jeffrey M., Rangasamy, Sampathkumar, Pirrotte, Patrick, Schork, Nicholas J.
Publicado 2021