Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum

por Marinov, Georgi K., Trevino, Alexandro E., Xiang, Tingting, Kundaje, Anshul, Grossman, Arthur R., Greenleaf, William J.
Publicado 2021

Single-Cell Transcriptomic Census of Endothelial Changes Induced by Matrix Stiffness and the Association with Atherosclerosis

por Zamani, Maedeh, Cheng, Yu-Hao, Charbonier, Frank, Gupta, Vivek Kumar, Mayer, Aaron T., Trevino, Alexandro E., Quertermous, Thomas, Chaudhuri, Ovijit, Cahan, Patrick, Huang, Ngan F.
Publicado 2022

CasKAS: direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping

por Marinov, Georgi K., Kim, Samuel H., Bagdatli, S. Tansu, Higashino, Soon Il, Trevino, Alexandro E., Tycko, Josh, Wu, Tong, Bintu, Lacramioara, Bassik, Michael C., He, Chuan, Kundaje, Anshul, Greenleaf, William J.
Publicado 2023

7-UP: Generating in silico CODEX from a small set of immunofluorescence markers

por Wu, Eric, Trevino, Alexandro E, Wu, Zhenqin, Swanson, Kyle, Kim, Honesty J, D’Angio, H Blaize, Preska, Ryan, Chiou, Aaron E, Charville, Gregory W, Dalerba, Piero, Duvvuri, Umamaheswar, Colevas, Alexander D, Levi, Jelena, Bedi, Nikita, Chang, Serena, Sunwoo, John, Egloff, Ann Marie, Uppaluri, Ravindra, Mayer, Aaron T, Zou, James
Publicado 2023

Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements

por Tycko, Josh, Wainberg, Michael, Marinov, Georgi K., Ursu, Oana, Hess, Gaelen T., Ego, Braeden K., Aradhana, Li, Amy, Truong, Alisa, Trevino, Alexandro E., Spees, Kaitlyn, Yao, David, Kaplow, Irene M., Greenside, Peyton G., Morgens, David W., Phanstiel, Douglas H., Snyder, Michael P., Bintu, Lacramioara, Greenleaf, William J., Kundaje, Anshul, Bassik, Michael C.
Publicado 2019

Nociceptor neurons affect cancer immunosurveillance

por Balood, Mohammad, Ahmadi, Maryam, Eichwald, Tuany, Ahmadi, Ali, Majdoubi, Abdelilah, Roversi, Karine, Roversi, Katiane, Lucido, Christopher T., Restaino, Anthony C., Huang, Siyi, Ji, Lexiang, Huang, Kai-Chih, Semerena, Elise, Thomas, Sini C., Trevino, Alexandro E., Merrison, Hannah, Parrin, Alexandre, Doyle, Benjamin, Vermeer, Daniel W., Spanos, William C., Williamson, Caitlin S., Seehus, Corey R., Foster, Simmie L., Dai, Hongyue, Shu, Chengyi J., Rangachari, Manu, Thibodeau, Jacques, V. Del Rincon, Sonia, Drapkin, Ronny, Rafei, Moutih, Ghasemlou, Nader, Vermeer, Paola D., Woolf, Clifford J., Talbot, Sebastien
Publicado 2022