ISOWN: accurate somatic mutation identification in the absence of normal tissue controls

por Kalatskaya, Irina, Trinh, Quang M., Spears, Melanie, McPherson, John D., Bartlett, John M. S., Stein, Lincoln
Publicado 2017

Evaluating the predictive accuracy of curated biological pathways in a public knowledgebase

por Wright, Adam J, Orlic-Milacic, Marija, Rothfels, Karen, Weiser, Joel, Trinh, Quang M, Jassal, Bijay, Haw, Robin A, Stein, Lincoln D
Publicado 2022

Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE

por Trinh, Quang M, Jen, Fei-Yang Arthur, Zhou, Ziru, Chu, Kar Ming, Perry, Marc D, Kephart, Ellen T, Contrino, Sergio, Ruzanov, Peter, Stein, Lincoln D
Publicado 2013

Spatiotemporal integration of molecular and anatomical data in virtual reality using semantic mapping

por Soh, Jung, Turinsky, Andrei L, Trinh, Quang M, Chang, Jasmine, Sabhaney, Ajay, Dong, Xiaoli, Gordon, Paul MK, Janzen, Ryan PW, Hau, David, Xia, Jianguo, Wishart, David S, Sensen, Christoph W
Publicado 2009

Exome sequencing identifies nonsegregating nonsense ATM and PALB2 variants in familial pancreatic cancer

por Grant, Robert C, Al-Sukhni, Wigdan, Borgida, Ayelet E, Holter, Spring, Kanji, Zaheer S, McPherson, Treasa, Whelan, Emily, Serra, Stefano, Trinh, Quang M, Peltekova, Vanya, Stein, Lincoln D, McPherson, John D, Gallinger, Steven
Publicado 2013

A brain precursor atlas reveals the acquisition of developmental-like states in adult cerebral tumours

por Hamed, Akram A., Kunz, Daniel J., El-Hamamy, Ibrahim, Trinh, Quang M., Subedar, Omar D., Richards, Laura M., Foltz, Warren, Bullivant, Garrett, Ware, Matthaeus, Vladoiu, Maria C., Zhang, Jiao, Raj, Antony M., Pugh, Trevor J., Taylor, Michael D., Teichmann, Sarah A., Stein, Lincoln D., Simons, Benjamin D., Dirks, Peter B.
Publicado 2022

Association between germline variants and somatic mutations in colorectal cancer

por Barfield, Richard, Qu, Conghui, Steinfelder, Robert S., Zeng, Chenjie, Harrison, Tabitha A., Brezina, Stefanie, Buchanan, Daniel D., Campbell, Peter T., Casey, Graham, Gallinger, Steven, Giannakis, Marios, Gruber, Stephen B., Gsur, Andrea, Hsu, Li, Huyghe, Jeroen R., Moreno, Victor, Newcomb, Polly A., Ogino, Shuji, Phipps, Amanda I., Slattery, Martha L., Thibodeau, Stephen N., Trinh, Quang M., Toland, Amanda E., Hudson, Thomas J., Sun, Wei, Zaidi, Syed H., Peters, Ulrike
Publicado 2022

Identification of pre-leukemic hematopoietic stem cells in acute leukemia

por Shlush, Liran I., Zandi, Sasan, Mitchell, Amanda, Chen, Weihsu Claire, Brandwein, Joseph M., Gupta, Vikas, Kennedy, James A., Schimmer, Aaron D., Schuh, Andre C., Yee, Karen W., McLeod, Jessica L., Doedens, Monica, Medeiros, Jessie J.F., Marke, Rene, Kim, Hyeoung Joon, Lee, Kwon, McPherson, John D., Hudson, Thomas J., Brown, Andrew M.K., Trinh, Quang M., Stein, Lincoln D., Minden, Mark D., Wang, Jean C.Y., Dick, John E.
Publicado 2014

Identification of genes expressed by immune cells of the colon that are regulated by colorectal cancer-associated variants

por Peltekova, Vanya D, Lemire, Mathieu, Qazi, Aamer M, Zaidi, Syed H E, Trinh, Quang M, Bielecki, Ryszard, Rogers, Marianne, Hodgson, Lyndsey, Wang, Mike, D’Souza, David J A, Zandi, Sasan, Chong, Taryne, Kwan, Jennifer Y Y, Kozak, Krystian, De Borja, Richard, Timms, Lee, Rangrej, Jagadish, Volar, Milica, Chan-Seng-Yue, Michelle, Beck, Timothy, Ash, Colleen, Lee, Shawna, Wang, Jianxin, Boutros, Paul C, Stein, Lincoln D, Dick, John E, Gryfe, Robert, McPherson, John D, Zanke, Brent W, Pollett, Aaron, Gallinger, Steven, Hudson, Thomas J
Publicado 2014

Identifying colorectal cancer caused by biallelic MUTYH pathogenic variants using tumor mutational signatures

por Georgeson, Peter, Harrison, Tabitha A., Pope, Bernard J., Zaidi, Syed H., Qu, Conghui, Steinfelder, Robert S., Lin, Yi, Joo, Jihoon E., Mahmood, Khalid, Clendenning, Mark, Walker, Romy, Amitay, Efrat L., Berndt, Sonja I., Brenner, Hermann, Campbell, Peter T., Cao, Yin, Chan, Andrew T., Chang-Claude, Jenny, Doheny, Kimberly F., Drew, David A., Figueiredo, Jane C., French, Amy J., Gallinger, Steven, Giannakis, Marios, Giles, Graham G., Gsur, Andrea, Gunter, Marc J., Hoffmeister, Michael, Hsu, Li, Huang, Wen-Yi, Limburg, Paul, Manson, JoAnn E., Moreno, Victor, Nassir, Rami, Nowak, Jonathan A., Obón-Santacana, Mireia, Ogino, Shuji, Phipps, Amanda I., Potter, John D., Schoen, Robert E., Sun, Wei, Toland, Amanda E., Trinh, Quang M., Ugai, Tomotaka, Macrae, Finlay A., Rosty, Christophe, Hudson, Thomas J., Jenkins, Mark A., Thibodeau, Stephen N., Winship, Ingrid M., Peters, Ulrike, Buchanan, Daniel D.
Publicado 2022

Body mass index and molecular subtypes of colorectal cancer

por Murphy, Neil, Newton, Christina C, Song, Mingyang, Papadimitriou, Nikos, Hoffmeister, Michael, Phipps, Amanda I, Harrison, Tabitha A, Newcomb, Polly A, Aglago, Elom K, Berndt, Sonja I, Brenner, Hermann, Buchanan, Daniel D, Cao, Yin, Chan, Andrew T, Chen, Xuechen, Cheng, Iona, Chang-Claude, Jenny, Dimou, Niki, Drew, David, Farris, Alton B, French, Amy J, Gallinger, Steven, Georgeson, Peter, Giannakis, Marios, Giles, Graham G, Gruber, Stephen B, Harlid, Sophia, Hsu, Li, Huang, Wen-Yi, Jenkins, Mark A, Laskar, Ruhina S, Le Marchand, Loic, Limburg, Paul, Lin, Yi, Mandic, Marko, Nowak, Johnathan A, Obón-Santacana, Mereia, Ogino, Shuji, Qu, Conghui, Sakoda, Lori C, Schoen, Robert E, Southey, Melissa C, Stadler, Zsofia K, Steinfelder, Robert S, Sun, Wei, Thibodeau, Stephen N, Toland, Amanda E, Trinh, Quang M, Tsilidis, Kostas K, Ugai, Tomotaka, Van Guelpen, Bethany, Wang, Xiaoliang, Woods, Michael O, Zaidi, Syed H, Gunter, Marc J, Peters, Ulrike, Campbell, Peter T
Publicado 2022

Genotoxic colibactin mutational signature in colorectal cancer is associated with clinicopathological features, specific genomic alterations and better survival

por Georgeson, Peter, Steinfelder, Robert S., Harrison, Tabitha A., Pope, Bernard J., Zaidi, Syed H., Qu, Conghui, Lin, Yi, Joo, Jihoon E., Mahmood, Khalid, Clendenning, Mark, Walker, Romy, Aglago, Elom K, Berndt, Sonja I., Brenner, Hermann, Campbell, Peter T., Cao, Yin, Chan, Andrew T., Chang-Claude, Jenny, Dimou, Niki, Doheny, Kimberly F., Drew, David A., Figueiredo, Jane C., French, Amy J., Gallinger, Steven, Giannakis, Marios, Giles, Graham G., Goode, Ellen L, Gruber, Stephen B, Gsur, Andrea, Gunter, Marc J., Harlid, Sophia, Hoffmeister, Michael, Hsu, Li, Huang, Wen-Yi, Huyghe, Jeroen R, Manson, JoAnn E., Moreno, Victor, Murphy, Neil, Nassir, Rami, Newton, Christina C., Nowak, Jonathan A., Obón-Santacana, Mireia, Ogino, Shuji, Pai, Rish K., Papadimitrou, Nikos, Potter, John D., Schoen, Robert E., Song, Mingyang, Sun, Wei, Toland, Amanda E., Trinh, Quang M., Tsilidis, Kostas, Ugai, Tomotaka, Um, Caroline Y, Macrae, Finlay A., Rosty, Christophe, Hudson, Thomas J., Winship, Ingrid M., Phipps, Amanda I., Jenkins, Mark A., Peters, Ulrike, Buchanan, Daniel D.
Publicado 2023

Landscape of somatic single nucleotide variants and indels in colorectal cancer and impact on survival

por Zaidi, Syed H., Harrison, Tabitha A., Phipps, Amanda I., Steinfelder, Robert, Trinh, Quang M., Qu, Conghui, Banbury, Barbara L., Georgeson, Peter, Grasso, Catherine S., Giannakis, Marios, Adams, Jeremy B., Alwers, Elizabeth, Amitay, Efrat L., Barfield, Richard T., Berndt, Sonja I., Borozan, Ivan, Brenner, Hermann, Brezina, Stefanie, Buchanan, Daniel D., Cao, Yin, Chan, Andrew T., Chang-Claude, Jenny, Connolly, Charles M., Drew, David A., Farris, Alton Brad, Figueiredo, Jane C., French, Amy J., Fuchs, Charles S., Garraway, Levi A., Gruber, Steve, Guinter, Mark A., Hamilton, Stanley R., Harlid, Sophia, Heisler, Lawrence E., Hidaka, Akihisa, Hopper, John L., Huang, Wen-Yi, Huyghe, Jeroen R., Jenkins, Mark A., Krzyzanowski, Paul M., Lemire, Mathieu, Lin, Yi, Luo, Xuemei, Mardis, Elaine R., McPherson, John D., Miller, Jessica K., Moreno, Victor, Mu, Xinmeng Jasmine, Nishihara, Reiko, Papadopoulos, Nickolas, Pasternack, Danielle, Quist, Michael J., Rafikova, Adilya, Reid, Emma E. G., Shinbrot, Eve, Shirts, Brian H., Stein, Lincoln D., Teney, Cherie D., Timms, Lee, Um, Caroline Y., Van Guelpen, Bethany, Van Tassel, Megan, Wang, Xiaolong, Wheeler, David A., Yung, Christina K., Hsu, Li, Ogino, Shuji, Gsur, Andrea, Newcomb, Polly A., Gallinger, Steven, Hoffmeister, Michael, Campbell, Peter T., Thibodeau, Stephen N., Sun, Wei, Hudson, Thomas J., Peters, Ulrike
Publicado 2020

The transcriptional landscape of Shh medulloblastoma

por Skowron, Patryk, Farooq, Hamza, Cavalli, Florence M. G., Morrissy, A. Sorana, Ly, Michelle, Hendrikse, Liam D., Wang, Evan Y., Djambazian, Haig, Zhu, Helen, Mungall, Karen L., Trinh, Quang M., Zheng, Tina, Dai, Shizhong, Stucklin, Ana S. Guerreiro, Vladoiu, Maria C., Fong, Vernon, Holgado, Borja L., Nor, Carolina, Wu, Xiaochong, Abd-Rabbo, Diala, Bérubé, Pierre, Wang, Yu Chang, Luu, Betty, Suarez, Raul A., Rastan, Avesta, Gillmor, Aaron H., Lee, John J. Y., Zhang, Xiao Yun, Daniels, Craig, Dirks, Peter, Malkin, David, Bouffet, Eric, Tabori, Uri, Loukides, James, Doz, François P., Bourdeaut, Franck, Delattre, Olivier O., Masliah-Planchon, Julien, Ayrault, Olivier, Kim, Seung-Ki, Meyronet, David, Grajkowska, Wieslawa A., Carlotti, Carlos G., de Torres, Carmen, Mora, Jaume, Eberhart, Charles G., Van Meir, Erwin G., Kumabe, Toshihiro, French, Pim J., Kros, Johan M., Jabado, Nada, Lach, Boleslaw, Pollack, Ian F., Hamilton, Ronald L., Rao, Amulya A. Nageswara, Giannini, Caterina, Olson, James M., Bognár, László, Klekner, Almos, Zitterbart, Karel, Phillips, Joanna J., Thompson, Reid C., Cooper, Michael K., Rubin, Joshua B., Liau, Linda M., Garami, Miklós, Hauser, Peter, Li, Kay Ka Wai, Ng, Ho-Keung, Poon, Wai Sang, Yancey Gillespie, G., Chan, Jennifer A., Jung, Shin, McLendon, Roger E., Thompson, Eric M., Zagzag, David, Vibhakar, Rajeev, Ra, Young Shin, Garre, Maria Luisa, Schüller, Ulrich, Shofuda, Tomoko, Faria, Claudia C., López-Aguilar, Enrique, Zadeh, Gelareh, Hui, Chi-Chung, Ramaswamy, Vijay, Bailey, Swneke D., Jones, Steven J., Mungall, Andrew J., Moore, Richard A., Calarco, John A., Stein, Lincoln D., Bader, Gary D., Reimand, Jüri, Ragoussis, Jiannis, Weiss, William A., Marra, Marco A., Suzuki, Hiromichi, Taylor, Michael D.
Publicado 2021