The Role of Nucleosome Positioning in the Evolution of Gene Regulation

por Tsankov, Alexander M., Thompson, Dawn Anne, Socha, Amanda, Regev, Aviv, Rando, Oliver J.
Publicado 2010

A Src inhibitor regulates the cell cycle of human pluripotent stem cells and improves directed differentiation

por Chetty, Sundari, Engquist, Elise N., Mehanna, Elie, Lui, Kathy O., Tsankov, Alexander M., Melton, Douglas A.
Publicado 2015

Communication between levels of transcriptional control improves robustness and adaptivity

por Tsankov, Alexander M, Brown, Christopher R, Yu, Michael C, Win, Moe Z, Silver, Pamela A, Casolari, Jason M
Publicado 2006

Transcription factor binding dynamics during human ESC differentiation

por Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander
Publicado 2015

An improved ScoreCard to assess the differentiation potential of human pluripotent stem cells

por Tsankov, Alexander M., Akopian, Veronika, Pop, Ramona, Chetty, Sundari, Gifford, Casey A., Daheron, Laurence, Melton, Douglas A., Tsankova, Nadejda M., Meissner, Alexander
Publicado 2015

Analysis of chromatin accessibility uncovers TEAD1 as a regulator of migration in human glioblastoma

por Tome-Garcia, Jessica, Erfani, Parsa, Nudelman, German, Tsankov, Alexander M., Katsyv, Igor, Tejero, Rut, Bin Zhang, Walsh, Martin, Friedel, Roland H., Zaslavsky, Elena, Tsankova, Nadejda M.
Publicado 2018

An atlas of late prenatal human neurodevelopment resolved by single-nucleus transcriptomics

por Ramos, Susana I., Mussa, Zarmeen M., Falk, Elisa N., Pai, Balagopal, Giotti, Bruno, Allette, Kimaada, Cai, Peiwen, Dekio, Fumiko, Sebra, Robert, Beaumont, Kristin G., Tsankov, Alexander M., Tsankova, Nadejda M.
Publicado 2022

Genome-wide identification and characterization of replication origins by deep sequencing

por Xu, Jia, Yanagisawa, Yoshimi, Tsankov, Alexander M, Hart, Christopher, Aoki, Keita, Kommajosyula, Naveen, Steinmann, Kathleen E, Bochicchio, James, Russ, Carsten, Regev, Aviv, Rando, Oliver J, Nusbaum, Chad, Niki, Hironori, Milos, Patrice, Weng, Zhiping, Rhind, Nicholas
Publicado 2012

Global delay in nascent strand DNA methylation

por Charlton, Jocelyn, Downing, Timothy L., Smith, Zachary D., Gu, Hongcang, Clement, Kendell, Pop, Ramona, Akopian, Veronika, Klages, Sven, Santos, David P., Tsankov, Alexander M., Timmermann, Bernd, Ziller, Michael J., Kiskinis, Evangelos, Gnirke, Andreas, Meissner, Alexander
Publicado 2018

Epigenomics and chromatin dynamics

por Akopian, Veronika, Chan, Michelle M, Clement, Kendell, Galonska, Christina, Gifford, Casey A, Lehtola, Elizabeth, Liao, Jing, Samavarchi-Tehrani, Payman, Sindhu, Camille, Smith, Zachary D, Tsankov, Alexander M, Webster, Jamie, Zhang, Yingying, Ziller, Michael J, Meissner, Alexander
Publicado 2012

Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells

por Liao, Jing, Karnik, Rahul, Gu, Hongcang, Ziller, Michael J., Clement, Kendell, Tsankov, Alexander M., Akopian, Veronika, Gifford, Casey A., Donaghey, Julie, Galonska, Christina, Pop, Ramona, Reyon, Deepak, Tsai, Shengdar Q., Mallard, William, Joung, J. Keith, Rinn, John L., Gnirke, Andreas, Meissner, Alexander
Publicado 2015

Dissecting neural differentiation regulatory networks through epigenetic footprinting

por Ziller, Michael J., Edri, Reuven, Yaffe, Yakey, Donaghey, Julie, Pop, Ramona, Mallard, William, Issner, Robbyn, Gifford, Casey A., Goren, Alon, Xing, Jeff, Gu, Hongcang, Cachiarelli, Davide, Tsankov, Alexander, Epstein, Chuck, Rinn, John R., Mikkelsen, Tarjei S., Kohlbacher, Oliver, Gnirke, Andreas, Bernstein, Bradley E., Elkabetz, Yechiel, Meissner, Alexander
Publicado 2014

Monocyte depletion enhances neutrophil influx and proneural to mesenchymal transition in glioblastoma

por Chen, Zhihong, Soni, Nishant, Pinero, Gonzalo, Giotti, Bruno, Eddins, Devon J., Lindblad, Katherine E., Ross, James L., Puigdelloses Vallcorba, Montserrat, Joshi, Tanvi, Angione, Angelo, Thomason, Wes, Keane, Aislinn, Tsankova, Nadejda M., Gutmann, David H., Lira, Sergio A., Lujambio, Amaia, Ghosn, Eliver E. B., Tsankov, Alexander M., Hambardzumyan, Dolores
Publicado 2023

A paracrine circuit of IL-1β/IL-1R1 between myeloid and tumor cells drives genotype-dependent glioblastoma progression

por Chen, Zhihong, Giotti, Bruno, Kaluzova, Milota, Vallcorba, Montse Puigdelloses, Rawat, Kavita, Price, Gabrielle, Herting, Cameron J., Pinero, Gonzalo, Cristea, Simona, Ross, James L., Ackley, James, Maximov, Victor, Szulzewsky, Frank, Thomason, Wes, Marquez-Ropero, Mar, Angione, Angelo, Nichols, Noah, Tsankova, Nadejda M., Michor, Franziska, Shayakhmetov, Dmitry M., Gutmann, David H., Tsankov, Alexander M., Hambardzumyan, Dolores
Publicado 2023

Author Correction: A local tumor microenvironment acquired super-enhancer induces an oncogenic driver in colorectal carcinoma

por Zhou, Royce W., Xu, Jia, Martin, Tiphaine C., Zachem, Alexis L., He, John, Ozturk, Sait, Demircioglu, Deniz, Bansal, Ankita, Trotta, Andrew P., Giotti, Bruno, Gryder, Berkley, Shen, Yao, Wu, Xuewei, Carcamo, Saul, Bosch, Kaitlyn, Hopkins, Benjamin, Tsankov, Alexander, Steinhagen, Randolph, Jones, Drew R., Asara, John, Chipuk, Jerry E., Brody, Rachel, Itzkowitz, Steven, Chio, Iok In Christine, Hasson, Dan, Bernstein, Emily, Parsons, Ramon E.
Publicado 2023

A local tumor microenvironment acquired super-enhancer induces an oncogenic driver in colorectal carcinoma

por Zhou, Royce W., Xu, Jia, Martin, Tiphaine C., Zachem, Alexis L., He, John, Ozturk, Sait, Demircioglu, Deniz, Bansal, Ankita, Trotta, Andrew P., Giotti, Bruno, Gryder, Berkley, Shen, Yao, Wu, Xuewei, Carcamo, Saul, Bosch, Kaitlyn, Hopkins, Benjamin, Tsankov, Alexander, Steinhagen, Randolph, Jones, Drew R., Asara, John, Chipuk, Jerry E., Brody, Rachel, Itzkowitz, Steven, Chio, Iok In Christine, Hasson, Dan, Bernstein, Emily, Parsons, Ramon E.
Publicado 2022

A revised airway epithelial hierarchy includes CFTR-expressing ionocytes

por Montoro, Daniel T., Haber, Adam L., Biton, Moshe, Vinarsky, Vladimir, Lin, Brian, Birket, Susan, Yuan, Feng, Chen, Sijia, Leung, Hui Min, Villoria, Jorge, Rogel, Noga, Burgin, Grace, Tsankov, Alexander, Waghray, Avinash, Slyper, Michal, Waldmann, Julia, Nguyen, Lan, Dionne, Danielle, Rozenblatt-Rosen, Orit, Tata, Purushothama Rao, Mou, Hongmei, Shivaraju, Manjunatha, Bihler, Hermann, Mense, Martin, Tearney, Guillermo J., Rowe, Steven M., Engelhardt, John F., Regev, Aviv, Rajagopal, Jayaraj
Publicado 2018

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

por Slyper, Michal, Porter, Caroline B. M., Ashenberg, Orr, Waldman, Julia, Drokhlyansky, Eugene, Wakiro, Isaac, Smillie, Christopher, Smith-Rosario, Gabriela, Wu, Jingyi, Dionne, Danielle, Vigneau, Sébastien, Jané-Valbuena, Judit, Tickle, Timothy L., Napolitano, Sara, Su, Mei-Ju, Patel, Anand G., Karlstrom, Asa, Gritsch, Simon, Nomura, Masashi, Waghray, Avinash, Gohil, Satyen H., Tsankov, Alexander M., Jerby-Arnon, Livnat, Cohen, Ofir, Klughammer, Johanna, Rosen, Yanay, Gould, Joshua, Nguyen, Lan, Hofree, Matan, Tramontozzi, Peter J., Li, Bo, Wu, Catherine J., Izar, Benjamin, Haq, Rizwan, Hodi, F. Stephen, Yoon, Charles H., Hata, Aaron N., Baker, Suzanne J., Suvà, Mario L., Bueno, Raphael, Stover, Elizabeth H., Clay, Michael R., Dyer, Michael A., Collins, Natalie B., Matulonis, Ursula A., Wagle, Nikhil, Johnson, Bruce E., Rotem, Asaf, Rozenblatt-Rosen, Orit, Regev, Aviv
Publicado 2020

Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

por Slyper, Michal, Porter, Caroline B. M., Ashenberg, Orr, Waldman, Julia, Drokhlyansky, Eugene, Wakiro, Isaac, Smillie, Christopher, Smith-Rosario, Gabriela, Wu, Jingyi, Dionne, Danielle, Vigneau, Sébastien, Jané-Valbuena, Judit, Tickle, Timothy L., Napolitano, Sara, Su, Mei-Ju, Patel, Anand G., Karlstrom, Asa, Gritsch, Simon, Nomura, Masashi, Waghray, Avinash, Gohil, Satyen H., Tsankov, Alexander M., Jerby-Arnon, Livnat, Cohen, Ofir, Klughammer, Johanna, Rosen, Yanay, Gould, Joshua, Nguyen, Lan, Hofree, Matan, Tramontozzi, Peter J., Li, Bo, Wu, Catherine J., Izar, Benjamin, Haq, Rizwan, Hodi, F. Stephen, Yoon, Charles H., Hata, Aaron N., Baker, Suzanne J., Suvà, Mario L., Bueno, Raphael, Stover, Elizabeth H., Clay, Michael R., Dyer, Michael A., Collins, Natalie B., Matulonis, Ursula A., Wagle, Nikhil, Johnson, Bruce E., Rotem, Asaf, Rozenblatt-Rosen, Orit, Regev, Aviv
Publicado 2020

An integrated cell atlas of the lung in health and disease

por Sikkema, Lisa, Ramírez-Suástegui, Ciro, Strobl, Daniel C., Gillett, Tessa E., Zappia, Luke, Madissoon, Elo, Markov, Nikolay S., Zaragosi, Laure-Emmanuelle, Ji, Yuge, Ansari, Meshal, Arguel, Marie-Jeanne, Apperloo, Leonie, Banchero, Martin, Bécavin, Christophe, Berg, Marijn, Chichelnitskiy, Evgeny, Chung, Mei-i, Collin, Antoine, Gay, Aurore C. A., Gote-Schniering, Janine, Hooshiar Kashani, Baharak, Inecik, Kemal, Jain, Manu, Kapellos, Theodore S., Kole, Tessa M., Leroy, Sylvie, Mayr, Christoph H., Oliver, Amanda J., von Papen, Michael, Peter, Lance, Taylor, Chase J., Walzthoeni, Thomas, Xu, Chuan, Bui, Linh T., De Donno, Carlo, Dony, Leander, Faiz, Alen, Guo, Minzhe, Gutierrez, Austin J., Heumos, Lukas, Huang, Ni, Ibarra, Ignacio L., Jackson, Nathan D., Kadur Lakshminarasimha Murthy, Preetish, Lotfollahi, Mohammad, Tabib, Tracy, Talavera-López, Carlos, Travaglini, Kyle J., Wilbrey-Clark, Anna, Worlock, Kaylee B., Yoshida, Masahiro, van den Berge, Maarten, Bossé, Yohan, Desai, Tushar J., Eickelberg, Oliver, Kaminski, Naftali, Krasnow, Mark A., Lafyatis, Robert, Nikolic, Marko Z., Powell, Joseph E., Rajagopal, Jayaraj, Rojas, Mauricio, Rozenblatt-Rosen, Orit, Seibold, Max A., Sheppard, Dean, Shepherd, Douglas P., Sin, Don D., Timens, Wim, Tsankov, Alexander M., Whitsett, Jeffrey, Xu, Yan, Banovich, Nicholas E., Barbry, Pascal, Duong, Thu Elizabeth, Falk, Christine S., Meyer, Kerstin B., Kropski, Jonathan A., Pe’er, Dana, Schiller, Herbert B., Tata, Purushothama Rao, Schultze, Joachim L., Teichmann, Sara A., Misharin, Alexander V., Nawijn, Martijn C., Luecken, Malte D., Theis, Fabian J.
Publicado 2023