A sensitive, support-vector-machine method for the detection of horizontal gene transfers in viral, archaeal and bacterial genomes

por Tsirigos, Aristotelis, Rigoutsos, Isidore
Publicado 2005

Human and mouse introns are linked to the same processes and functions through each genome's most frequent non-conserved motifs

por Tsirigos, Aristotelis, Rigoutsos, Isidore
Publicado 2008

Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes

por Tsirigos, Aristotelis, Rigoutsos, Isidore
Publicado 2009

A new computational method for the detection of horizontal gene transfer events

por Tsirigos, Aristotelis, Rigoutsos, Isidore
Publicado 2005

Connecting Chromatin Structures to Gene Regulation Using Dynamic Polymer Simulations

por Fu, Yi, Clark, Finnegan, Nomikou, Sofia, Tsirigos, Aristotelis, Lionnet, Timothee
Publicado 2023

HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

por Lazaris, Charalampos, Kelly, Stephen, Ntziachristos, Panagiotis, Aifantis, Iannis, Tsirigos, Aristotelis
Publicado 2017

Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

por Yu, Minjun, Scherwitzl, Iris, Opp, Silvana, Tsirigos, Aristotelis, Meruelo, Daniel
Publicado 2019

Combinatorial Modulation of Signaling Pathways Reveals Cell-Type-Specific Requirements for Highly Efficient and Synchronous iPSC Reprogramming

por Vidal, Simon E., Amlani, Bhishma, Chen, Taotao, Tsirigos, Aristotelis, Stadtfeld, Matthias
Publicado 2014

lncRNA-screen: an interactive platform for computationally screening long non-coding RNAs in large genomics datasets

por Gong, Yixiao, Huang, Hsuan-Ting, Liang, Yu, Trimarchi, Thomas, Aifantis, Iannis, Tsirigos, Aristotelis
Publicado 2017

Human blastocysts of normal and abnormal karyotypes display distinct transcriptome profiles

por Licciardi, Frederick, Lhakhang, Tenzin, Kramer, Yael G., Zhang, Yutong, Heguy, Adriana, Tsirigos, Aristotelis
Publicado 2018

Machine learning approaches to predict drug efficacy and toxicity in oncology

por Badwan, Bara A., Liaropoulos, Gerry, Kyrodimos, Efthymios, Skaltsas, Dimitrios, Tsirigos, Aristotelis, Gorgoulis, Vassilis G.
Publicado 2023

Bacteriophages as potential new mammalian pathogens

por Tetz, George V., Ruggles, Kelly V., Zhou, Hua, Heguy, Adriana, Tsirigos, Aristotelis, Tetz, Victor
Publicado 2017

Complete Genome Sequence of Kluyvera intestini sp. nov., Isolated from the Stomach of a Patient with Gastric Cancer

por Tetz, George, Vecherkovskaya, Maria, Zappile, Paul, Dolgalev, Igor, Tsirigos, Aristotelis, Heguy, Adriana, Tetz, Victor
Publicado 2017

Integrative CRISPR Activation and Small Molecule Inhibitor Screening for lncRNA Mediating BRAF Inhibitor Resistance in Melanoma

por Shamloo, Sama, Kloetgen, Andreas, Petroulia, Stavroula, Hockemeyer, Kathryn, Sievers, Sonja, Tsirigos, Aristotelis, Aifantis, Ioannis, Imig, Jochen
Publicado 2023

Stratification of TAD boundaries reveals preferential insulation of super-enhancers by strong boundaries

por Gong, Yixiao, Lazaris, Charalampos, Sakellaropoulos, Theodore, Lozano, Aurelie, Kambadur, Prabhanjan, Ntziachristos, Panagiotis, Aifantis, Iannis, Tsirigos, Aristotelis
Publicado 2018

Draft Genome Sequence of Streptococcus halitosis sp. nov., Isolated from the Dorsal Surface of the Tongue of a Patient with Halitosis

por Tetz, George, Vikina, Daria, Brown, Stuart, Zappile, Paul, Dolgalev, Igor, Tsirigos, Aristotelis, Heguy, Adriana, Tetz, Victor
Publicado 2019

Decreased cytotoxic T cells and TCR clonality in organ transplant recipients with squamous cell carcinoma

por Frazzette, Nicholas, Khodadadi-Jamayran, Alireza, Doudican, Nicole, Santana, Alexis, Felsen, Diane, Pavlick, Anna C., Tsirigos, Aristotelis, Carucci, John A.
Publicado 2020

MethNet: a robust approach to identify regulatory hubs and their distal targets in cancer

por Sakellaropoulos, Theodore, Do, Catherine, Jiang, Guimei, Cova, Giulia, Meyn, Peter, Dimartino, Dacia, Ramaswami, Sitharam, Heguy, Adriana, Tsirigos, Aristotelis, Skok, Jane A
Publicado 2023

The Transcription Factor Zfx Regulates Peripheral T Cell Self-Renewal and Proliferation

por Smith-Raska, Matthew R., Arenzana, Teresita L., D’Cruz, Louise M., Khodadadi-Jamayran, Alireza, Tsirigos, Aristotelis, Goldrath, Ananda W., Reizis, Boris
Publicado 2018

Apolipoprotein E4 Effects a Distinct Transcriptomic Profile and Dendritic Arbor Characteristics in Hippocampal Neurons Cultured in vitro

por Diaz, Jenny R., Martá-Ariza, Mitchell, Khodadadi-Jamayran, Alireza, Heguy, Adriana, Tsirigos, Aristotelis, Pankiewicz, Joanna E., Sullivan, Patrick M., Sadowski, Martin J.
Publicado 2022