CXCR3 regulates stem and proliferative CD8+ T cells during chronic infection by promoting interactions with DCs in splenic bridging channels

por Bangs, Derek J., Tsitsiklis, Alexandra, Steier, Zoë, Chan, Shiao Wei, Kaminski, James, Streets, Aaron, Yosef, Nir, Robey, Ellen A.
Publicado 2022

An Unusual MHC Molecule Generates Protective CD8+ T Cell Responses to Chronic Infection

por Tsitsiklis, Alexandra, Bangs, Derek J., Lutes, Lydia K., Chan, Shiao W., Geiger, Kristina M., Modzelewski, Andrew J., Labarta-Bajo, Lara, Wang, Yang, Zuniga, Elina I., Dai, Shaodong, Robey, Ellen A.
Publicado 2020

The antibiotic resistance reservoir of the lung microbiome expands with age

por Chu, Victoria T., Tsitsiklis, Alexandra, Mick, Eran, Ambroggio, Lilliam, Kalantar, Katrina L., Glascock, Abigail, Osborne, Christina M., Wagner, Brandie D., Matthay, Michael A., DeRisi, Joseph L., Calfee, Carolyn S., Mourani, Peter M., Langelier, Charles R.
Publicado 2023

Peptide Centric Vβ Specific Germline Contacts Shape a Specialist T Cell Response

por Wang, Yang, Tsitsiklis, Alexandra, Devoe, Stephanie, Gao, Wei, Chu, H. Hamlet, Zhang, Yan, Li, Wei, Wong, Wing Ki, Deane, Charlotte M., Neau, David, Slansky, Jill E., Thomas, Paul G., Robey, Ellen A., Dai, Shaodong
Publicado 2022

A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants

por Albright, Jack, Mick, Eran, Sanchez-Guerrero, Estella, Kamm, Jack, Mitchell, Anthea, Detweiler, Angela M., Neff, Norma, Tsitsiklis, Alexandra, Hayakawa Serpa, Paula, Ratnasiri, Kalani, Havlir, Diane, Kistler, Amy, DeRisi, Joseph L., Pisco, Angela Oliveira, Langelier, Charles R.
Publicado 2022

Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults

por Mick, Eran, Tsitsiklis, Alexandra, Spottiswoode, Natasha, Caldera, Saharai, Serpa, Paula Hayakawa, Detweiler, Angela M., Neff, Norma, Pisco, Angela Oliveira, Li, Lucy M., Retallack, Hanna, Ratnasiri, Kalani, Williamson, Kayla M., Soesanto, Victoria, Simões, Eric A. F., Kistler, Amy, Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2021

Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children

por Mick, Eran, Tsitsiklis, Alexandra, Kamm, Jack, Kalantar, Katrina L., Caldera, Saharai, Lyden, Amy, Tan, Michelle, Detweiler, Angela M., Neff, Norma, Osborne, Christina M., Williamson, Kayla M., Soesanto, Victoria, Leroue, Matthew, Maddux, Aline B., Simões, Eric A.F., Carpenter, Todd C., Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2023

Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children

por Mick, Eran, Tsitsiklis, Alexandra, Spottiswoode, Natasha, Caldera, Saharai, Serpa, Paula Hayakawa, Detweiler, Angela M., Neff, Norma, Pisco, Angela Oliveira, Li, Lucy M., Retallack, Hanna, Ratnasiri, Kalani, Williamson, Kayla M., Soesanto, Victoria, Simões, Eric A. F., Smith, Christiana, Abuogi, Lisa, Kistler, Amy, Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2022

Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults

por Kalantar, Katrina L., Neyton, Lucile, Abdelghany, Mazin, Mick, Eran, Jauregui, Alejandra, Caldera, Saharai, Serpa, Paula Hayakawa, Ghale, Rajani, Albright, Jack, Sarma, Aartik, Tsitsiklis, Alexandra, Leligdowicz, Aleksandra, Christenson, Stephanie A., Liu, Kathleen, Kangelaris, Kirsten N., Hendrickson, Carolyn, Sinha, Pratik, Gomez, Antonio, Neff, Norma, Pisco, Angela, Doernberg, Sarah B., Derisi, Joseph L., Matthay, Michael A., Calfee, Carolyn S., Langelier, Charles R.
Publicado 2022

Impaired immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19

por Tsitsiklis, Alexandra, Zha, Beth Shoshana, Byrne, Ashley, Devoe, Catherine, Levan, Sophia, Rackaityte, Elze, Sunshine, Sara, Mick, Eran, Ghale, Rajani, Jauregui, Alejandra, Sarma, Aartik, Neff, Norma, Serpa, Paula Hayakawa, Deiss, Thomas J., Kistler, Amy, Carrillo, Sidney, Ansel, K. Mark, Leligdowicz, Aleksandra, Christenson, Stephanie, Jones, Norman, Wu, Bing, Darmanis, Spyros, Matthay, Michael A., Lynch, Susan V., DeRisi, Joseph L., Hendrickson, Carolyn M., Kangelaris, Kirsten N., Krummel, Matthew F., Woodruff, Prescott G., Erle, David J., Rosenberg, Oren, Calfee, Carolyn S., Langelier, Charles R.
Publicado 2021

Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS

por Sarma, Aartik, Christenson, Stephanie A., Byrne, Ashley, Mick, Eran, Pisco, Angela Oliveira, DeVoe, Catherine, Deiss, Thomas, Ghale, Rajani, Zha, Beth Shoshana, Tsitsiklis, Alexandra, Jauregui, Alejandra, Moazed, Farzad, Detweiler, Angela M., Spottiswoode, Natasha, Sinha, Pratik, Neff, Norma, Tan, Michelle, Serpa, Paula Hayakawa, Willmore, Andrew, Ansel, K. Mark, Wilson, Jennifer G., Leligdowicz, Aleksandra, Siegel, Emily R., Sirota, Marina, DeRisi, Joseph L., Matthay, Michael A., Hendrickson, Carolyn M., Kangelaris, Kirsten N., Krummel, Matthew F., Woodruff, Prescott G., Erle, David J., Calfee, Carolyn S., Langelier, Charles R.
Publicado 2021

Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics

por Tsitsiklis, Alexandra, Osborne, Christina M, Kamm, Jack, Williamson, Kayla, Kalantar, Katrina, Dudas, Gytis, Caldera, Saharai, Lyden, Amy, Tan, Michelle, Neff, Norma, Soesanto, Victoria, Harris, J Kirk, Ambroggio, Lilliam, Maddux, Aline B, Carpenter, Todd C, Reeder, Ron W, Locandro, Chris, Simões, Eric A F, Leroue, Matthew K, Hall, Mark W, Zuppa, Athena F, Carcillo, Joseph, Meert, Kathleen L, Sapru, Anil, Pollack, Murray M, McQuillen, Patrick S, Notterman, Daniel A, Dean, J Michael, Zinter, Matt S, Wagner, Brandie D, DeRisi, Joseph L, Mourani, Peter M, Langelier, Charles R
Publicado 2022

Launching a saliva-based SARS-CoV-2 surveillance testing program on a university campus

por Ehrenberg, Alexander J., Moehle, Erica A., Brook, Cara E., Doudna Cate, Andrew H., Witkowsky, Lea B., Sachdeva, Rohan, Hirsh, Ariana, Barry, Kerrie, Hamilton, Jennifer R., Lin-Shiao, Enrique, McDevitt, Shana, Valentin-Alvarado, Luis, Letourneau, Kaitlyn N., Hunter, Lauren, Keller, Amanda, Pestal, Kathleen, Frankino, Phillip A., Murley, Andrew, Nandakumar, Divya, Stahl, Elizabeth C., Tsuchida, Connor A., Gildea, Holly K., Murdock, Andrew G., Hochstrasser, Megan L., O’Brien, Elizabeth, Ciling, Alison, Tsitsiklis, Alexandra, Worden, Kurtresha, Dugast-Darzacq, Claire, Hays, Stephanie G., Barber, Colin C., McGarrigle, Riley, Lam, Emily K., Ensminger, David C., Bardet, Lucie, Sherry, Carolyn, Harte, Anna, Nicolette, Guy, Giannikopoulos, Petros, Hockemeyer, Dirk, Petersen, Maya, Urnov, Fyodor D., Ringeisen, Bradley R., Boots, Mike, Doudna, Jennifer A.
Publicado 2021

Workshop-based learning and networking: a scalable model for research capacity strengthening in low- and middle-income countries

por Perier, Celine, Nasinghe, Emmanuel, Charles, Isabelle, Ssetaba, Leoson Junior, Ahyong, Vida, Bangs, Derek, Beatty, P. Robert, Czudnochowski, Nadine, Diallo, Amy, Dugan, Eli, Fabius, Jacqueline M., Fong Baker, Hildy, Gardner, Jackson, Isaacs, Stephen, Joanah, Birungi, Kalantar, Katrina, Kateete, David, Knight, Matt, Krasilnikov, Maria, Krogan, Nevan J., Langelier, Chaz, Lee, Eric, Li, Lucy M., Licht, Daniel, Lien, Katie, Lyons, Zilose, Mboowa, Gerald, Mwebaza, Ivan, Mwesigwa, Savannah, Nalwadda, Geraldine, Nichols, Robert, Penaranda, Maria Elena, Petnic, Sarah, Phelps, Maira, Popper, Stephen J., Rape, Michael, Reingold, Arthur, Robbins, Richard, Rosenberg, Oren S., Savage, David F., Schildhauer, Samuel, Settles, Matthew L., Sserwadda, Ivan, Stanley, Sarah, Tato, Cristina M., Tsitsiklis, Alexandra, Van Dis, Erik, Vanaerschot, Manu, Vinden, Joanna, Cox, Jeffery S., Joloba, Moses L., Schaletzky, Julia
Publicado 2022