Predicting tumour content of liquid biopsies from cell-free DNA

por Cardner, Mathias, Marass, Francesco, Gedvilaite, Erika, Yang, Julie L., Tsui, Dana W. Y., Beerenwinkel, Niko
Publicado 2023

Genome-wide mutational signatures in low-coverage whole genome sequencing of cell-free DNA

por Wan, Jonathan C. M., Stephens, Dennis, Luo, Lingqi, White, James R., Stewart, Caitlin M., Rousseau, Benoît, Tsui, Dana W. Y., Diaz, Luis A.
Publicado 2022

Blood-Based Liquid Biopsy for Comprehensive Cancer Genomic Profiling Using Next-Generation Sequencing: An Emerging Paradigm for Non-invasive Cancer Detection and Management in Dogs

por Kruglyak, Kristina M., Chibuk, Jason, McLennan, Lisa, Nakashe, Prachi, Hernandez, Gilberto E., Motalli-Pepio, Rita, Fath, Donna M., Tynan, John A., Holtvoigt, Lauren E., Chorny, Ilya, Grosu, Daniel S., Tsui, Dana W.Y., Flory, Andi
Publicado 2021

Systematic Identification of Placental Epigenetic Signatures for the Noninvasive Prenatal Detection of Edwards Syndrome

por Tsui, Dana W. Y., Lam, Y. M. Doris, Lee, Wing S., Leung, Tak Y., Lau, Tze K., Lau, Elizabeth T., Tang, Mary H. Y., Akolekar, Ranjit, Nicolaides, Kypros H., Chiu, Rossa W. K., Lo, Y. M. Dennis, Chim, Stephen S. C.
Publicado 2010

Effects of Collection and Processing Procedures on Plasma Circulating Cell-Free DNA from Cancer Patients

por Risberg, Bente, Tsui, Dana W.Y., Biggs, Heather, Ruiz-Valdepenas Martin de Almagro, Andrea, Dawson, Sarah-Jane, Hodgkin, Charlotte, Jones, Linda, Parkinson, Christine, Piskorz, Anna, Marass, Francesco, Chandrananda, Dineika, Moore, Elizabeth, Morris, James, Plagnol, Vincent, Rosenfeld, Nitzan, Caldas, Carlos, Brenton, James D., Gale, Davina
Publicado 2018

Cell‐free DNA profiling in retinoblastoma patients with advanced intraocular disease: An MSKCC experience

por Kothari, Prachi, Marass, Francesco, Yang, Julie L., Stewart, Caitlin M., Stephens, Dennis, Patel, Juber, Hasan, Maysun, Jing, Xiaohong, Meng, Fanli, Enriquez, Jeanette, Huberman, Kety, Viale, Agnes, Francis, Jasmine H., Berger, Michael F., Shukla, Neerav, Abramson, David H., Dunkel, Ira J., Tsui, Dana W.Y.
Publicado 2020

Retrospective Evaluation of Somatic Alterations in Cell-Free DNA from Blood in Retinoblastoma

por Abramson, David H., Mandelker, Diana, Francis, Jasmine H., Dunkel, Ira J., Brannon, A. Rose, Benayed, Ryma, Berger, Michael F., Arcila, Maria E., Ladanyi, Marc, Friedman, Danielle Novetsky, Jayakumaran, Gowtham, Diosdado, Monica S., Robbins, Melissa A., Haggag-Lindgren, Dianna, Shukla, Neerav, Walsh, Michael, Kothari, Prachi, Tsui, Dana W.Y.
Publicado 2021

Mutant-RB1 circulating tumor DNA in the blood of unilateral retinoblastoma patients: What happens during enucleation surgery: A pilot study

por Abramson, David H., Mandelker, Diana L., Brannon, A. Rose, Dunkel, Ira J., Benayed, Ryma, Berger, Michael F., Arcila, Maria E., Ladanyi, Marc, Friedman, Danielle Novetsky, Jayakumaran, Gowtham, Diosdado, Monica S., Robbins, Melissa A., Haggag-Lindgren, Dianna, Shukla, Neerav, Walsh, Michael F., Kothari, Prachi, Tsui, Dana W. Y., Francis, Jasmine H.
Publicado 2023

Horizons in Veterinary Precision Oncology: Fundamentals of Cancer Genomics and Applications of Liquid Biopsy for the Detection, Characterization, and Management of Cancer in Dogs

por Chibuk, Jason, Flory, Andi, Kruglyak, Kristina M., Leibman, Nicole, Nahama, Alexis, Dharajiya, Nilesh, van den Boom, Dirk, Jensen, Taylor J., Friedman, Jeffrey S., Shen, M. Richard, Clemente-Vicario, Francisco, Chorny, Ilya, Tynan, John A., Lytle, Katherine M., Holtvoigt, Lauren E., Murtaza, Muhammed, Diaz, Luis A., Tsui, Dana W. Y., Grosu, Daniel S.
Publicado 2021

Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer

por Murtaza, Muhammed, Dawson, Sarah-Jane, Pogrebniak, Katherine, Rueda, Oscar M., Provenzano, Elena, Grant, John, Chin, Suet-Feung, Tsui, Dana W. Y., Marass, Francesco, Gale, Davina, Ali, H. Raza, Shah, Pankti, Contente-Cuomo, Tania, Farahani, Hossein, Shumansky, Karey, Kingsbury, Zoya, Humphray, Sean, Bentley, David, Shah, Sohrab P., Wallis, Matthew, Rosenfeld, Nitzan, Caldas, Carlos
Publicado 2015

Age at cancer diagnosis by breed, weight, sex, and cancer type in a cohort of more than 3,000 dogs: Determining the optimal age to initiate cancer screening in canine patients

por Rafalko, Jill M., Kruglyak, Kristina M., McCleary-Wheeler, Angela L., Goyal, Vidit, Phelps-Dunn, Ashley, Wong, Lilian K., Warren, Chelsea D., Brandstetter, Gina, Rosentel, Michelle C., DiMarzio, Lauren, McLennan, Lisa M., O’Kell, Allison L., Cohen, Todd A., Grosu, Daniel S., Chibuk, Jason, Tsui, Dana W. Y., Chorny, Ilya, Flory, Andi
Publicado 2023

Detection of Age-Related Somatic Alterations in Canine Blood Using Next-Generation Sequencing-Based Liquid Biopsy: An Analysis of over 4800 Dogs

por Kruglyak, Kristina M., O’Kell, Allison L., Cohen, Todd A., Marshall, Maggie A., Ruiz-Perez, Carlos A., Marass, Francesco, Tynan, John A., Hicks, Susan C., Lytle, Katherine M., Phelps-Dunn, Ashley, Brandstetter, Gina, Warren, Chelsea D., DiMarzio, Lauren R., Rosentel, Michelle C., Wong, Lilian K., McLennan, Lisa M., Rafalko, Jill M., Grosu, Daniel S., Chibuk, Jason, Chorny, Ilya, McCleary-Wheeler, Angela L., Flory, Andi, Tsui, Dana W. Y.
Publicado 2023

Tracking Tumor Evolution in Glioma through Liquid Biopsies of Cerebrospinal Fluid

por Miller, Alexandra M., Shah, Ronak H., Pentsova, Elena I., Pourmaleki, Maryam, Briggs, Samuel, Distefano, Natalie, Zheng, Youyun, Skakodub, Anna, Mehta, Smrutiben A., Campos, Carl, Hsieh, Wan-Ying, Selcuklu, S. Duygu, Ling, Lilan, Meng, Fanli, Jing, Xiaohong, Samoila, Aliaksandra, Bale, Tejus A., Tsui, Dana W.Y., Grommes, Christian, Viale, Agnes, Souweidane, Mark M., Tabar, Viviane, Brennan, Cameron W., Reiner, Anne S., Rosenblum, Marc, Panageas, Katherine S., DeAngelis, Lisa M., Young, Robert J., Berger, Michael F., Mellinghoff, Ingo K.
Publicado 2019

Cancer detection in clinical practice and using blood‐based liquid biopsy: A retrospective audit of over 350 dogs

por Flory, Andi, McLennan, Lisa, Peet, Betsy, Kroll, Marissa, Stuart, Deirdre, Brown, Devon, Stuebner, Kathy, Phillips, Brenda, Coomber, Brenda L., Woods, J. Paul, Miller, Mairin, Tripp, Chelsea D., Wolf‐Ringwall, Amber, Kruglyak, Kristina M., McCleary‐Wheeler, Angela L., Phelps‐Dunn, Ashley, Wong, Lilian K., Warren, Chelsea D., Brandstetter, Gina, Rosentel, Michelle C., DiMarzio, Lauren R., O'Kell, Allison L., Cohen, Todd A., Grosu, Daniel S., Chibuk, Jason, Tsui, Dana W. Y., Chorny, Ilya, Rafalko, Jill M.
Publicado 2023

The somatic mutation profiles of 2,433 breast cancers refines their genomic and transcriptomic landscapes

por Pereira, Bernard, Chin, Suet-Feung, Rueda, Oscar M., Vollan, Hans-Kristian Moen, Provenzano, Elena, Bardwell, Helen A., Pugh, Michelle, Jones, Linda, Russell, Roslin, Sammut, Stephen-John, Tsui, Dana W. Y., Liu, Bin, Dawson, Sarah-Jane, Abraham, Jean, Northen, Helen, Peden, John F., Mukherjee, Abhik, Turashvili, Gulisa, Green, Andrew R., McKinney, Steve, Oloumi, Arusha, Shah, Sohrab, Rosenfeld, Nitzan, Murphy, Leigh, Bentley, David R., Ellis, Ian O., Purushotham, Arnie, Pinder, Sarah E., Børresen-Dale, Anne-Lise, Earl, Helena M., Pharoah, Paul D., Ross, Mark T., Aparicio, Samuel, Caldas, Carlos
Publicado 2016

Erratum: The somatic mutation profiles of 2,433 breast cancers refine their genomic and transcriptomic landscapes

por Pereira, Bernard, Chin, Suet-Feung, Rueda, Oscar M., Vollan, Hans-Kristian Moen, Provenzano, Elena, Bardwell, Helen A., Pugh, Michelle, Jones, Linda, Russell, Roslin, Sammut, Stephen-John, Tsui, Dana W. Y., Liu, Bin, Dawson, Sarah-Jane, Abraham, Jean, Northen, Helen, Peden, John F., Mukherjee, Abhik, Turashvili, Gulisa, Green, Andrew R., McKinney, Steve, Oloumi, Arusha, Shah, Sohrab, Rosenfeld, Nitzan, Murphy, Leigh, Bentley, David R., Ellis, Ian O., Purushotham, Arnie, Pinder, Sarah E., Børresen-Dale, Anne-Lise, Earl, Helena M., Pharoah, Paul D., Ross, Mark T., Aparicio, Samuel, Caldas, Carlos
Publicado 2016

Tumor fraction-guided cell-free DNA profiling in metastatic solid tumor patients

por Tsui, Dana W. Y., Cheng, Michael L., Shady, Maha, Yang, Julie L., Stephens, Dennis, Won, Helen, Srinivasan, Preethi, Huberman, Kety, Meng, Fanli, Jing, Xiaohong, Patel, Juber, Hasan, Maysun, Johnson, Ian, Gedvilaite, Erika, Houck-Loomis, Brian, Socci, Nicholas D., Selcuklu, S. Duygu, Seshan, Venkatraman E., Zhang, Hongxin, Chakravarty, Debyani, Zehir, Ahmet, Benayed, Ryma, Arcila, Maria, Ladanyi, Marc, Funt, Samuel A., Feldman, Darren R., Li, Bob T., Razavi, Pedram, Rosenberg, Jonathan, Bajorin, Dean, Iyer, Gopa, Abida, Wassim, Scher, Howard I., Rathkopf, Dana, Viale, Agnes, Berger, Michael F., Solit, David B.
Publicado 2021

Clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: The CANcer De...

por Flory, Andi, Kruglyak, Kristina M., Tynan, John A., McLennan, Lisa M., Rafalko, Jill M., Fiaux, Patrick Christian, Hernandez, Gilberto E., Marass, Francesco, Nakashe, Prachi, Ruiz-Perez, Carlos A., Fath, Donna M., Jennings, Thuy, Motalli-Pepio, Rita, Wotrang, Kate, McCleary-Wheeler, Angela L., Lana, Susan, Phillips, Brenda, Flesner, Brian K., Leibman, Nicole F., LaDue, Tracy, Tripp, Chelsea D., Coomber, Brenda L., Woods, J. Paul, Miller, Mairin, Aiken, Sean W., Wolf-Ringwall, Amber, Borgatti, Antonella, Kraska, Kathleen, Thomson, Christopher B., Kosanovich Cahalane, Alane, Murray, Rebecca L., Kisseberth, William C., Camps-Palau, Maria A., Floch, Franck, Beaudu-Lange, Claire, Klajer-Peres, Aurélia, Keravel, Olivier, Fribourg-Blanc, Luc-André, Mazetier, Pascale Chicha, Marco, Angelo, McLeod, Molly B., Portillo, Erin, Clark, Terry S., Judd, Scott, Feinberg, C. Kirk, Benitez, Marie, Runyan, Candace, Hackett, Lindsey, Lafey, Scott, Richardson, Danielle, Vineyard, Sarah, Tefend Campbell, Mary, Dharajiya, Nilesh, Jensen, Taylor J., van den Boom, Dirk, Diaz, Luis A., Grosu, Daniel S., Polk, Arthur, Marsal, Kalle, Hicks, Susan Cho, Lytle, Katherine M., Holtvoigt, Lauren, Chibuk, Jason, Chorny, Ilya, Tsui, Dana W. Y.
Publicado 2022