Benchmark and integration of resources for the estimation of human transcription factor activities

por Garcia-Alonso, Luz, Holland, Christian H., Ibrahim, Mahmoud M., Turei, Denes, Saez-Rodriguez, Julio
Publicado 2019

NRF2-ome: An Integrated Web Resource to Discover Protein Interaction and Regulatory Networks of NRF2

por Türei, Dénes, Papp, Diána, Fazekas, Dávid, Földvári-Nagy, László, Módos, Dezső, Lenti, Katalin, Csermely, Péter, Korcsmáros, Tamás
Publicado 2013

Targets of drugs are generally, and targets of drugs having side effects are specifically good spreaders of human interactome perturbations

por Perez-Lopez, Áron R., Szalay, Kristóf Z., Türei, Dénes, Módos, Dezső, Lenti, Katalin, Korcsmáros, Tamás, Csermely, Peter
Publicado 2015

Autophagy Regulatory Network — A systems-level bioinformatics resource for studying the mechanism and regulation of autophagy

por Türei, Dénes, Földvári-Nagy, László, Fazekas, Dávid, Módos, Dezső, Kubisch, János, Kadlecsik, Tamás, Demeter, Amanda, Lenti, Katalin, Csermely, Péter, Vellai, Tibor, Korcsmáros, Tamás
Publicado 2015

Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities

por Müller-Dott, Sophia, Tsirvouli, Eirini, Vazquez, Miguel, Ramirez Flores, Ricardo O, Badia-i-Mompel, Pau, Fallegger, Robin, Türei, Dénes, Lægreid, Astrid, Saez-Rodriguez, Julio
Publicado 2023

Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis

por Türei, Dénes, Valdeolivas, Alberto, Gul, Lejla, Palacio‐Escat, Nicolàs, Klein, Michal, Ivanova, Olga, Ölbei, Márton, Gábor, Attila, Theis, Fabian, Módos, Dezső, Korcsmáros, Tamás, Saez‐Rodriguez, Julio
Publicado 2021

SignaLink 2 – a signaling pathway resource with multi-layered regulatory networks

por Fazekas, Dávid, Koltai, Mihály, Türei, Dénes, Módos, Dezső, Pálfy, Máté, Dúl, Zoltán, Zsákai, Lilian, Szalay-Bekő, Máté, Lenti, Katalin, Farkas, Illés J, Vellai, Tibor, Csermely, Péter, Korcsmáros, Tamás
Publicado 2013

Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

por Dimitrov, Daniel, Türei, Dénes, Garrido-Rodriguez, Martin, Burmedi, Paul L., Nagai, James S., Boys, Charlotte, Ramirez Flores, Ricardo O., Kim, Hyojin, Szalai, Bence, Costa, Ivan G., Valdeolivas, Alberto, Dugourd, Aurélien, Saez-Rodriguez, Julio
Publicado 2022

Network pharmacology modeling identifies synergistic Aurora B and ZAK interaction in triple-negative breast cancer

por Tang, Jing, Gautam, Prson, Gupta, Abhishekh, He, Liye, Timonen, Sanna, Akimov, Yevhen, Wang, Wenyu, Szwajda, Agnieszka, Jaiswal, Alok, Turei, Denes, Yadav, Bhagwan, Kankainen, Matti, Saarela, Jani, Saez-Rodriguez, Julio, Wennerberg, Krister, Aittokallio, Tero
Publicado 2019

Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways

por Poletti, Martina, Treveil, Agatha, Csabai, Luca, Gul, Leila, Modos, Dezso, Madgwick, Matthew, Olbei, Marton, Bohar, Balazs, Valdeolivas, Alberto, Turei, Denes, Verstockt, Bram, Triana, Sergio, Alexandrov, Theodore, Saez-Rodriguez, Julio, Stanifer, Megan L., Boulant, Steeve, Korcsmaros, Tamas
Publicado 2022

Adipocyte-secreted BMP8b mediates adrenergic-induced remodeling of the neuro-vascular network in adipose tissue

por Pellegrinelli, Vanessa, Peirce, Vivian J., Howard, Laura, Virtue, Samuel, Türei, Dénes, Senzacqua, Martina, Frontini, Andrea, Dalley, Jeffrey W., Horton, Antony R., Bidault, Guillaume, Severi, Ilenia, Whittle, Andrew, Rahmouni, Kamal, Saez-Rodriguez, Julio, Cinti, Saverio, Davies, Alun M., Vidal-Puig, Antonio
Publicado 2018

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST)

por Touré, Vasundra, Vercruysse, Steven, Acencio, Marcio Luis, Lovering, Ruth C, Orchard, Sandra, Bradley, Glyn, Casals-Casas, Cristina, Chaouiya, Claudine, del-Toro, Noemi, Flobak, Åsmund, Gaudet, Pascale, Hermjakob, Henning, Hoyt, Charles Tapley, Licata, Luana, Lægreid, Astrid, Mungall, Christopher J, Niknejad, Anne, Panni, Simona, Perfetto, Livia, Porras, Pablo, Pratt, Dexter, Saez-Rodriguez, Julio, Thieffry, Denis, Thomas, Paul D, Türei, Dénes, Kuiper, Martin
Publicado 2020

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks

por Csabai, Luca, Fazekas, Dávid, Kadlecsik, Tamás, Szalay-Bekő, Máté, Bohár, Balázs, Madgwick, Matthew, Módos, Dezső, Ölbei, Márton, Gul, Lejla, Sudhakar, Padhmanand, Kubisch, János, Oyeyemi, Oyebode James, Liska, Orsolya, Ari, Eszter, Hotzi, Bernadette, Billes, Viktor A, Molnár, Eszter, Földvári-Nagy, László, Csályi, Kitti, Demeter, Amanda, Pápai, Nóra, Koltai, Mihály, Varga, Máté, Lenti, Katalin, Farkas, Illés J, Türei, Dénes, Csermely, Péter, Vellai, Tibor, Korcsmáros, Tamás
Publicado 2021

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

por Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, Devasahayam Arokia Balaya, Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic‐Milacic, Marija, Senff Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Valdeolivas, Alberto, Esteban‐Medina, Marina, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Augé, Franck, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Wilighagen, Egon L, Pico, Alexander R, Evelo, Chris T, Gillespie, Marc E, Stein, Lincoln D, Hermjakob, Henning, D'Eustachio, Peter, Saez‐Rodriguez, Julio, Dopazo, Joaquin, Valencia, Alfonso, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard
Publicado 2021

COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms

por Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, D A B, Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic‐Milacic, Marija, Senff‐Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Valdeolivas, Alberto, Esteban‐Medina, Marina, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Augé, Franck, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Willighagen, Egon L, Pico, Alexander R, Evelo, Chris T, Gillespie, Marc E, Stein, Lincoln D, Hermjakob, Henning, D'Eustachio, Peter, Saez‐Rodriguez, Julio, Dopazo, Joaquin, Valencia, Alfonso, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard
Publicado 2021