Intracytoplasmic Copper Homeostasis Controls Cytochrome c Oxidase Production

por Ekici, Seda, Turkarslan, Serdar, Pawlik, Grzegorz, Dancis, Andrew, Baliga, Nitin S., Koch, Hans-Georg, Daldal, Fevzi
Publicado 2014

Turning Saccharomyces cerevisiae into a Frataxin-Independent Organism

por Yoon, Heeyong, Knight, Simon A. B., Pandey, Alok, Pain, Jayashree, Turkarslan, Serdar, Pain, Debkumar, Dancis, Andrew
Publicado 2015

Niche adaptation by expansion and reprogramming of general transcription factors

por Turkarslan, Serdar, Reiss, David J, Gibbins, Goodwin, Su, Wan Lin, Pan, Min, Bare, J Christopher, Plaisier, Christopher L, Baliga, Nitin S
Publicado 2011

Network portal: a database for storage, analysis and visualization of biological networks

por Turkarslan, Serdar, Wurtmann, Elisabeth J., Wu, Wei-Ju, Jiang, Ning, Bare, J. Christopher, Foley, Karen, Reiss, David J., Novichkov, Pavel, Baliga, Nitin S.
Publicado 2014

Adaptive Prediction Emerges Over Short Evolutionary Time Scales

por López García de Lomana, Adrián, Kaur, Amardeep, Turkarslan, Serdar, Beer, Karlyn D., Mast, Fred D., Smith, Jennifer J., Aitchison, John D., Baliga, Nitin S.
Publicado 2017

Selective Translation of Low Abundance and Upregulated Transcripts in Halobacterium salinarum

por López García de Lomana, Adrián, Kusebauch, Ulrike, Raman, Arjun V., Pan, Min, Turkarslan, Serdar, Lorenzetti, Alan P. R., Moritz, Robert L., Baliga, Nitin S.
Publicado 2020

A high-resolution network model for global gene regulation in Mycobacterium tuberculosis

por Peterson, Eliza J.R., Reiss, David J., Turkarslan, Serdar, Minch, Kyle J., Rustad, Tige, Plaisier, Christopher L., Longabaugh, William J.R., Sherman, David R., Baliga, Nitin S.
Publicado 2014

Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network

por Rustad, Tige R, Minch, Kyle J, Ma, Shuyi, Winkler, Jessica K, Hobbs, Samuel, Hickey, Mark, Brabant, William, Turkarslan, Serdar, Price, Nathan D, Baliga, Nitin S, Sherman, David R
Publicado 2014

A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis

por Turkarslan, Serdar, Peterson, Eliza J R, Rustad, Tige R, Minch, Kyle J, Reiss, David J, Morrison, Robert, Ma, Shuyi, Price, Nathan D, Sherman, David R, Baliga, Nitin S
Publicado 2015

Addressing barriers in FAIR data practices for biomedical data

por Hughes, Laura D., Tsueng, Ginger, DiGiovanna, Jack, Horvath, Thomas D., Rasmussen, Luke V., Savidge, Tor C., Stoeger, Thomas, Turkarslan, Serdar, Wu, Qinglong, Wu, Chunlei, Su, Andrew I., Pache, Lars
Publicado 2023

A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogen

por Yoon, Sung Ho, Turkarslan, Serdar, Reiss, David J., Pan, Min, Burn, June A., Costa, Kyle C., Lie, Thomas J., Slagel, Joseph, Moritz, Robert L., Hackett, Murray, Leigh, John A., Baliga, Nitin S.
Publicado 2013

Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii

por López García de Lomana, Adrián, Schäuble, Sascha, Valenzuela, Jacob, Imam, Saheed, Carter, Warren, Bilgin, Damla D., Yohn, Christopher B., Turkarslan, Serdar, Reiss, David J., Orellana, Mónica V., Price, Nathan D., Baliga, Nitin S.
Publicado 2015

Sulfur Metabolites Play Key System-Level Roles in Modulating Denitrification

por Otwell, Anne E., Carr, Alex V., Majumder, Erica L. W., Ruiz, Maryann K., Wilpiszeski, Regina L., Hoang, Linh T., Webb, Bill, Turkarslan, Serdar, Gibbons, Sean M., Elias, Dwayne A., Stahl, David A., Siuzdak, Gary, Baliga, Nitin S.
Publicado 2021

A single-cell based precision medicine approach using glioblastoma patient-specific models

por Park, James H., Feroze, Abdullah H., Emerson, Samuel N., Mihalas, Anca B., Keene, C. Dirk, Cimino, Patrick J., de Lomana, Adrian Lopez Garcia, Kannan, Kavya, Wu, Wei-Ju, Turkarslan, Serdar, Baliga, Nitin S., Patel, Anoop P.
Publicado 2022

A Genome-Scale Atlas Reveals Complex Interplay of Transcription and Translation in an Archaeon

por Lorenzetti, Alan P. R., Kusebauch, Ulrike, Zaramela, Lívia S., Wu, Wei-Ju, de Almeida, João P. P., Turkarslan, Serdar, L. G. de Lomana, Adrián, Gomes-Filho, José V., Vêncio, Ricardo Z. N., Moritz, Robert L., Koide, Tie, Baliga, Nitin S.
Publicado 2023

The DNA-binding network of Mycobacterium tuberculosis

por Minch, Kyle J., Rustad, Tige R., Peterson, Eliza J. R., Winkler, Jessica, Reiss, David J., Ma, Shuyi, Hickey, Mark, Brabant, William, Morrison, Bob, Turkarslan, Serdar, Mawhinney, Chris, Galagan, James E., Price, Nathan D., Baliga, Nitin S., Sherman, David R.
Publicado 2015

Genetic program activity delineates risk, relapse, and therapy responsiveness in multiple myeloma

por Wall, Matthew A., Turkarslan, Serdar, Wu, Wei-Ju, Danziger, Samuel A., Reiss, David J., Mason, Mike J., Dervan, Andrew P., Trotter, Matthew W. B., Bassett, Douglas, Hershberg, Robert M., Lomana, Adrián López García de, Ratushny, Alexander V., Baliga, Nitin S.
Publicado 2021

Genetic manipulation of candidate phyla radiation bacteria provides functional insights into microbial dark matter

por Wang, Yaxi, Gallagher, Larry A., Andrade, Pia A., Liu, Andi, Humphreys, Ian R., Turkarslan, Serdar, Cutler, Kevin J., Arrieta-Ortiz, Mario L., Li, Yaqiao, Radey, Matthew C., McLean, Jeffrey S., Cong, Qian, Baker, David, Baliga, Nitin S., Peterson, S. Brook, Mougous, Joseph D.
Publicado 2023

Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle

por Wang, Yaxi, Gallagher, Larry A., Andrade, Pia A., Liu, Andi, Humphreys, Ian R., Turkarslan, Serdar, Cutler, Kevin J., Arrieta-Ortiz, Mario L., Li, Yaqiao, Radey, Matthew C., McLean, Jeffrey S., Cong, Qian, Baker, David, Baliga, Nitin S., Peterson, S. Brook, Mougous, Joseph D.
Publicado 2023

Synergistic epistasis enhances the co-operativity of mutualistic interspecies interactions

por Turkarslan, Serdar, Stopnisek, Nejc, Thompson, Anne W., Arens, Christina E., Valenzuela, Jacob J., Wilson, James, Hunt, Kristopher A., Hardwicke, Jessica, de Lomana, Adrián López García, Lim, Sujung, Seah, Yee Mey, Fu, Ying, Wu, Liyou, Zhou, Jizhong, Hillesland, Kristina L., Stahl, David A., Baliga, Nitin S.
Publicado 2021