Integrative computational epigenomics to build data-driven gene regulation hypotheses

por Chen, Tyrone, Tyagi, Sonika
Publicado 2020

A Survey of Current Resources to Study lncRNA-Protein Interactions

por Philip, Melcy, Chen, Tyrone, Tyagi, Sonika
Publicado 2021

Linc2function: A Comprehensive Pipeline and Webserver for Long Non-Coding RNA (lncRNA) Identification and Functional Predictions Using Deep Learning Approaches

por Ramakrishnaiah, Yashpal, Morris, Adam P., Dhaliwal, Jasbir, Philip, Melcy, Kuhlmann, Levin, Tyagi, Sonika
Publicado 2023

Biosynthetic constraints on amino acid synthesis at the base of the food chain may determine their use in higher-order consumer genomes

por Gómez Ortega, Javier, Raubenheimer, David, Tyagi, Sonika, Mirth, Christen K., Piper, Matthew D. W.
Publicado 2023

Insights into the neurochemical signature of the Innervation of Beige Fat

por Stefanidis, Aneta, Wiedmann, Nicole M., Tyagi, Sonika, Allen, Andrew M., Watt, Matthew J., Oldfield, Brian J.
Publicado 2018

Computational prediction of microRNAs in marine bacteria of the genus Thalassospira

por Dang, Thi Hoang Yen, Tyagi, Sonika, D’Cunha, Glenn, Bhave, Mrinal, Crawford, Russell, Ivanova, Elena P.
Publicado 2019

CEP3 levels affect starvation-related growth responses of the primary root

por Delay, Christina, Chapman, Kelly, Taleski, Michael, Wang, Yaowei, Tyagi, Sonika, Xiong, Yan, Imin, Nijat, Djordjevic, Michael A
Publicado 2019

Towards an open, collaborative, reusable framework for sharing hands-on bioinformatics training workshops

por Watson-Haigh, Nathan S, Revote, Jerico, Suchecki, Radosław, Tyagi, Sonika, Corley, Susan M, Shang, Catherine A, McGrath, Annette
Publicado 2017

Transcriptomic analysis reveals myometrial topologically associated domains linked to the onset of human term labour

por Tyagi, Sonika, Chan, Eng-Cheng, Barker, Daniel, McElduff, Patrick, Taylor, Kelly A, Riveros, Carlos, Singh, Esha, Smith, Roger
Publicado 2022

Assessment of microRNA expression in mouse epididymal epithelial cells and spermatozoa by next generation sequencing

por Anderson, Amanda L., Stanger, Simone J., Mihalas, Bettina P., Tyagi, Sonika, Holt, Janet E., McLaughlin, Eileen A., Nixon, Brett
Publicado 2015

Whole Genome Expression Array Profiling Highlights Differences in Mucosal Defense Genes in Barrett's Esophagus and Esophageal Adenocarcinoma

por Nancarrow, Derek J., Clouston, Andrew D., Smithers, B. Mark, Gotley, David C., Drew, Paul A., Watson, David I., Tyagi, Sonika, Hayward, Nicholas K., Whiteman, David C.
Publicado 2011

Next Generation Sequencing Analysis Reveals Segmental Patterns of microRNA Expression in Mouse Epididymal Epithelial Cells

por Nixon, Brett, Stanger, Simone J., Mihalas, Bettina P., Reilly, Jackson N., Anderson, Amanda L., Dun, Matthew D., Tyagi, Sonika, Holt, Janet E., McLaughlin, Eileen A.
Publicado 2015

Characterization of the Melanoma miRNAome by Deep Sequencing

por Stark, Mitchell S., Tyagi, Sonika, Nancarrow, Derek J., Boyle, Glen M., Cook, Anthony L., Whiteman, David C., Parsons, Peter G., Schmidt, Christopher, Sturm, Richard A., Hayward, Nicholas K.
Publicado 2010

Characterisation of mouse epididymosomes reveals a complex profile of microRNAs and a potential mechanism for modification of the sperm epigenome

por Reilly, Jackson N., McLaughlin, Eileen A., Stanger, Simone J., Anderson, Amanda L., Hutcheon, Kate, Church, Kiralee, Mihalas, Bettina P., Tyagi, Sonika, Holt, Janet E., Eamens, Andrew L., Nixon, Brett
Publicado 2016

Next-generation sequencing: a challenge to meet the increasing demand for training workshops in Australia

por Watson-Haigh, Nathan S., Shang, Catherine A., Haimel, Matthias, Kostadima, Myrto, Loos, Remco, Deshpande, Nandan, Duesing, Konsta, Li, Xi, McGrath, Annette, McWilliam, Sean, Michnowicz, Simon, Moolhuijzen, Paula, Quenette, Steve, Revote, Jerico Nico De Leon, Tyagi, Sonika, Schneider, Maria V.
Publicado 2013

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia

por Schneider, Maria Victoria, Griffin, Philippa C, Tyagi, Sonika, Flannery, Madison, Dayalan, Saravanan, Gladman, Simon, Watson-Haigh, Nathan, Bayer, Philipp E, Charleston, Michael, Cooke, Ira, Cook, Rob, Edwards, Richard J, Edwards, David, Gorse, Dominique, McConville, Malcolm, Powell, David, Wilkins, Marc R, Lonie, Andrew
Publicado 2017

Best practice data life cycle approaches for the life sciences

por Griffin, Philippa C., Khadake, Jyoti, LeMay, Kate S., Lewis, Suzanna E., Orchard, Sandra, Pask, Andrew, Pope, Bernard, Roessner, Ute, Russell, Keith, Seemann, Torsten, Treloar, Andrew, Tyagi, Sonika, Christiansen, Jeffrey H., Dayalan, Saravanan, Gladman, Simon, Hangartner, Sandra B., Hayden, Helen L., Ho, William W.H., Keeble-Gagnère, Gabriel, Korhonen, Pasi K., Neish, Peter, Prestes, Priscilla R., Richardson, Mark F., Watson-Haigh, Nathan S., Wyres, Kelly L., Young, Neil D., Schneider, Maria Victoria
Publicado 2018

Frequent somatic MAP3K5 and MAP3K9 mutations in metastatic melanoma identified by exome sequencing

por Stark, Mitchell S, Woods, Susan L, Gartside, Michael G, Bonazzi, Vanessa F, Dutton-Regester, Ken, Aoude, Lauren G, Chow, Donald, Sereduk, Chris, Niemi, Natalie M, Tang, Nanyun, Ellis, Jonathan J, Reid, Jeffrey, Zismann, Victoria, Tyagi, Sonika, Muzny, Donna, Newsham, Irene, Wu, YuanQing, Palmer, Jane M, Pollak, Thomas, Youngkin, David, Brooks, Bradford R, Lanagan, Catherine, Schmidt, Christopher W, Kobe, Bostjan, MacKeigan, Jeffrey P, Yin, Hongwei, Brown, Kevin M, Gibbs, Richard, Trent, Jeffrey, Hayward, Nicholas K
Publicado 2011

Four simple recommendations to encourage best practices in research software

por Jiménez, Rafael C., Kuzak, Mateusz, Alhamdoosh, Monther, Barker, Michelle, Batut, Bérénice, Borg, Mikael, Capella-Gutierrez, Salvador, Chue Hong, Neil, Cook, Martin, Corpas, Manuel, Flannery, Madison, Garcia, Leyla, Gelpí, Josep Ll., Gladman, Simon, Goble, Carole, González Ferreiro, Montserrat, Gonzalez-Beltran, Alejandra, Griffin, Philippa C., Grüning, Björn, Hagberg, Jonas, Holub, Petr, Hooft, Rob, Ison, Jon, Katz, Daniel S., Leskošek, Brane, López Gómez, Federico, Oliveira, Luis J., Mellor, David, Mosbergen, Rowland, Mulder, Nicola, Perez-Riverol, Yasset, Pergl, Robert, Pichler, Horst, Pope, Bernard, Sanz, Ferran, Schneider, Maria V., Stodden, Victoria, Suchecki, Radosław, Svobodová Vařeková, Radka, Talvik, Harry-Anton, Todorov, Ilian, Treloar, Andrew, Tyagi, Sonika, van Gompel, Maarten, Vaughan, Daniel, Via, Allegra, Wang, Xiaochuan, Watson-Haigh, Nathan S., Crouch, Steve
Publicado 2017

Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria

por Mu, Andre, Klare, William P., Baines, Sarah L., Ignatius Pang, C. N., Guérillot, Romain, Harbison-Price, Nichaela, Keller, Nadia, Wilksch, Jonathan, Nhu, Nguyen Thi Khanh, Phan, Minh-Duy, Keller, Bernhard, Nijagal, Brunda, Tull, Dedreia, Dayalan, Saravanan, Chua, Hwa Huat Charlie, Skoneczny, Dominik, Koval, Jason, Hachani, Abderrahman, Shah, Anup D., Neha, Nitika, Jadhav, Snehal, Partridge, Sally R., Cork, Amanda J., Peters, Kate, Bertolla, Olivia, Brouwer, Stephan, Hancock, Steven J., Álvarez-Fraga, Laura, De Oliveira, David M. P., Forde, Brian, Dale, Ashleigh, Mujchariyakul, Warasinee, Walsh, Calum J., Monk, Ian, Fitzgerald, Anna, Lum, Mabel, Correa-Ospina, Carolina, Roy Chowdhury, Piklu, Parton, Robert G., De Voss, James, Beckett, James, Monty, Francois, McKinnon, Jessica, Song, Xiaomin, Stephen, John R., Everest, Marie, Bellgard, Matt I., Tinning, Matthew, Leeming, Michael, Hocking, Dianna, Jebeli, Leila, Wang, Nancy, Ben Zakour, Nouri, Yasar, Serhat A., Vecchiarelli, Stefano, Russell, Tonia, Zaw, Thiri, Chen, Tyrone, Teng, Don, Kassir, Zena, Lithgow, Trevor, Jenney, Adam, Cole, Jason N., Nizet, Victor, Sorrell, Tania C., Peleg, Anton Y., Paterson, David L., Beatson, Scott A., Wu, Jemma, Molloy, Mark P., Syme, Anna E., Goode, Robert J. A., Hunter, Adam A., Bowland, Grahame, West, Nicholas P., Wilkins, Marc R., Djordjevic, Steven P., Davies, Mark R., Seemann, Torsten, Howden, Benjamin P., Pascovici, Dana, Tyagi, Sonika, Schittenhelm, Ralf B., De Souza, David P., McConville, Malcolm J., Iredell, Jonathan R., Cordwell, Stuart J., Strugnell, Richard A., Stinear, Timothy P., Schembri, Mark A., Walker, Mark J.
Publicado 2023