3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

por Guo, Wenbin, Tzioutziou, Nikoleta A, Stephen, Gordon, Milne, Iain, Calixto, Cristiane PG, Waugh, Robbie, Brown, John W. S., Zhang, Runxuan
Publicado 2020

Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs

por Calixto, Cristiane P. G., Tzioutziou, Nikoleta A., James, Allan B., Hornyik, Csaba, Guo, Wenbin, Zhang, Runxuan, Nimmo, Hugh G., Brown, John W. S.
Publicado 2019

How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)

por James, Allan B., Calixto, Cristiane P.G., Tzioutziou, Nikoleta A., Guo, Wenbin, Zhang, Runxuan, Simpson, Craig G., Jiang, Wenying, Nimmo, Gillian A., Brown, John W.S., Nimmo, Hugh G.
Publicado 2018

AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript‐specific expression in Arabidopsis thaliana

por Zhang, Runxuan, Calixto, Cristiane P. G., Tzioutziou, Nikoleta A., James, Allan B., Simpson, Craig G., Guo, Wenbin, Marquez, Yamile, Kalyna, Maria, Patro, Rob, Eyras, Eduardo, Barta, Andrea, Nimmo, Hugh G., Brown, John W. S.
Publicado 2015

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

por Zhang, Runxuan, Calixto, Cristiane P. G., Marquez, Yamile, Venhuizen, Peter, Tzioutziou, Nikoleta A., Guo, Wenbin, Spensley, Mark, Entizne, Juan Carlos, Lewandowska, Dominika, ten Have, Sara, Frei dit Frey, Nicolas, Hirt, Heribert, James, Allan B., Nimmo, Hugh G., Barta, Andrea, Kalyna, Maria, Brown, John W. S.
Publicado 2017