NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequences

por Tzou, Philip L., Huang, Xiaoqiu, Shafer, Robert W.
Publicado 2017

Temporal Trends in HIV-1 Mutations Used for the Surveillance of Transmitted Drug Resistance

por Rhee, Soo-Yon, Tzou, Philip L., Shafer, Robert W.
Publicado 2021

Coronavirus Resistance Database (CoV-RDB): SARS-CoV-2 susceptibility to monoclonal antibodies, convalescent plasma, and plasma from vaccinated persons

por Tzou, Philip L., Tao, Kaiming, Pond, Sergei L. Kosakovsky, Shafer, Robert W.
Publicado 2022

SARS-CoV-2 Antiviral Therapy

por Tao, Kaiming, Tzou, Philip L., Nouhin, Janin, Bonilla, Hector, Jagannathan, Prasanna, Shafer, Robert W.
Publicado 2021

Selection analyses of paired HIV-1 gag and gp41 sequences obtained before and after antiretroviral therapy

por Tzou, Philip L., Rhee, Soo-Yon, Pond, Sergei L. Kosakovsky, Manasa, Justen, Shafer, Robert W.
Publicado 2018

1744. Next generation sequencing (NGS) optimization of Oral Polio Vaccine samples

por Carrington, Yuan J, Zhou, Frank, Tzou, Philip, Xiao, Mingze, Leary, Sean, Altamirano, Jonathan, Maldonado, Yvonne A
Publicado 2023

Susceptibility of SARS-CoV-2 Omicron Variants to Therapeutic Monoclonal Antibodies: Systematic Review and Meta-analysis

por Tao, Kaiming, Tzou, Philip L., Kosakovsky Pond, Sergei L., Ioannidis, John P. A., Shafer, Robert W.
Publicado 2022

Analysis of unusual and signature APOBEC-mutations in HIV-1 pol next-generation sequences

por Tzou, Philip L., Kosakovsky Pond, Sergei L., Avila-Rios, Santiago, Holmes, Susan P., Kantor, Rami, Shafer, Robert W.
Publicado 2020

Sierra SARS-CoV-2 sequence and antiviral resistance analysis program

por Tzou, Philip L., Tao, Kaiming, Sahoo, Malaya K., Kosakovsky Pond, Sergei L., Pinsky, Benjamin A., Shafer, Robert W.
Publicado 2022

Coronavirus Antiviral Research Database (CoV-RDB): An Online Database Designed to Facilitate Comparisons between Candidate Anti-Coronavirus Compounds

por Tzou, Philip L., Tao, Kaiming, Nouhin, Janin, Rhee, Soo-Yon, Hu, Benjamin D., Pai, Shruti, Parkin, Neil, Shafer, Robert W.
Publicado 2020

HIV-1 Group M Capsid Amino Acid Variability: Implications for Sequence Quality Control of Genotypic Resistance Testing

por Tao, Kaiming, Rhee, Soo-Yon, Tzou, Philip L., Osman, Zachary A., Pond, Sergei L. Kosakovsky, Holmes, Susan P., Shafer, Robert W.
Publicado 2023

A systematic review of the genetic mechanisms of dolutegravir resistance

por Rhee, Soo-Yon, Grant, Philip M, Tzou, Philip L, Barrow, Geoffrey, Harrigan, P Richard, Ioannidis, John P A, Shafer, Robert W
Publicado 2019

The biological and clinical significance of emerging SARS-CoV-2 variants

por Tao, Kaiming, Tzou, Philip L., Nouhin, Janin, Gupta, Ravindra K., de Oliveira, Tulio, Kosakovsky Pond, Sergei L., Fera, Daniela, Shafer, Robert W.
Publicado 2021

HIV-1 5’-Leader Mutations in Plasma Viruses Before and After the Development of Reverse Transcriptase Inhibitor-Resistance Mutations

por Nouhin, Janin, Tzou, Philip L., Rhee, Soo-Yon, Sahoo, Malaya K., Pinsky, Benjamin A., Krupkin, Miri, Puglisi, Joseph D., Puglisi, Elisabetta V., Shafer, Robert W.
Publicado 2023

Evolution of gag and gp41 in Patients Receiving Ritonavir-Boosted Protease Inhibitors

por Manasa, Justen, Varghese, Vici, Pond, Sergei L. Kosakovsky, Rhee, Soo-Yon, Tzou, Philip L., Fessel, W. Jeffrey, Jang, Karen S., White, Elizabeth, Rögnvaldsson, Thorsteinn, Katzenstein, David A., Shafer, Robert W.
Publicado 2017

Collaborative update of a rule-based expert system for HIV-1 genotypic resistance test interpretation

por Paredes, Roger, Tzou, Philip L., van Zyl, Gert, Barrow, Geoff, Camacho, Ricardo, Carmona, Sergio, Grant, Philip M., Gupta, Ravindra K., Hamers, Raph L., Harrigan, P. Richard, Jordan, Michael R., Kantor, Rami, Katzenstein, David A., Kuritzkes, Daniel R., Maldarelli, Frank, Otelea, Dan, Wallis, Carole L., Schapiro, Jonathan M., Shafer, Robert W.
Publicado 2017