Probabilistic modeling and machine learning in structural and systems biology

por Kaski, Samuel, Rousu, Juho, Ukkonen, Esko
Publicado 2007

Efficient algorithms for the discovery of gapped factors

por Apostolico, Alberto, Pizzi, Cinzia, Ukkonen, Esko
Publicado 2011

Accurate self-correction of errors in long reads using de Bruijn graphs

por Salmela, Leena, Walve, Riku, Rivals, Eric, Ukkonen, Esko
Publicado 2017

MODER2: first-order Markov modeling and discovery of monomeric and dimeric binding motifs

por Toivonen, Jarkko, Das, Pratyush K, Taipale, Jussi, Ukkonen, Esko
Publicado 2020

MOODS: fast search for position weight matrix matches in DNA sequences

por Korhonen, Janne, Martinmäki, Petri, Pizzi, Cinzia, Rastas, Pasi, Ukkonen, Esko
Publicado 2009

Fast scaffolding with small independent mixed integer programs

por Salmela, Leena, Mäkinen, Veli, Välimäki, Niko, Ylinen, Johannes, Ukkonen, Esko
Publicado 2011

An analytic and systematic framework for estimating metabolic flux ratios from (13)C tracer experiments

por Rantanen, Ari, Rousu, Juho, Jouhten, Paula, Zamboni, Nicola, Maaheimo, Hannu, Ukkonen, Esko
Publicado 2008

Modular discovery of monomeric and dimeric transcription factor binding motifs for large data sets

por Toivonen, Jarkko, Kivioja, Teemu, Jolma, Arttu, Yin, Yimeng, Taipale, Jussi, Ukkonen, Esko
Publicado 2018

Integrating sequence, evolution and functional genomics in regulatory genomics

por Vingron, Martin, Brazma, Alvis, Coulson, Richard, van Helden, Jacques, Manke, Thomas, Palin, Kimmo, Sand, Olivier, Ukkonen, Esko
Publicado 2009

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

por Wei, Gong-Hong, Badis, Gwenael, Berger, Michael F, Kivioja, Teemu, Palin, Kimmo, Enge, Martin, Bonke, Martin, Jolma, Arttu, Varjosalo, Markku, Gehrke, Andrew R, Yan, Jian, Talukder, Shaheynoor, Turunen, Mikko, Taipale, Mikko, Stunnenberg, Hendrik G, Ukkonen, Esko, Hughes, Timothy R, Bulyk, Martha L, Taipale, Jussi
Publicado 2010

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

por Ahola, Virpi, Lehtonen, Rainer, Somervuo, Panu, Salmela, Leena, Koskinen, Patrik, Rastas, Pasi, Välimäki, Niko, Paulin, Lars, Kvist, Jouni, Wahlberg, Niklas, Tanskanen, Jaakko, Hornett, Emily A., Ferguson, Laura C., Luo, Shiqi, Cao, Zijuan, de Jong, Maaike A., Duplouy, Anne, Smolander, Olli-Pekka, Vogel, Heiko, McCoy, Rajiv C., Qian, Kui, Chong, Wong Swee, Zhang, Qin, Ahmad, Freed, Haukka, Jani K., Joshi, Aruj, Salojärvi, Jarkko, Wheat, Christopher W., Grosse-Wilde, Ewald, Hughes, Daniel, Katainen, Riku, Pitkänen, Esa, Ylinen, Johannes, Waterhouse, Robert M., Turunen, Mikko, Vähärautio, Anna, Ojanen, Sami P., Schulman, Alan H., Taipale, Minna, Lawson, Daniel, Ukkonen, Esko, Mäkinen, Veli, Goldsmith, Marian R., Holm, Liisa, Auvinen, Petri, Frilander, Mikko J., Hanski, Ilkka
Publicado 2014