T-KDE: a method for genome-wide identification of constitutive protein binding sites from multiple ChIP-seq data sets

por Li, Yuanyuan, Umbach, David M, Li, Leping
Publicado 2014

Using parental phenotypes in case-parent studies

por Shi, Min, Umbach, David M., Weinberg, Clarice R.
Publicado 2015

Optimized mixed Markov models for motif identification

por Huang, Weichun, Umbach, David M, Ohler, Uwe, Li, Leping
Publicado 2006

A response to information criterion-based clustering with order-restricted candidate profiles in short time-course microarray experiments

por Peddada, Shyamal D, Umbach, David M, Harris, Shawn F
Publicado 2009

IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data

por Niu, Liang, Huang, Weichun, Umbach, David M, Li, Leping
Publicado 2014

Assessing Candidate Gene nsSNPs for Phenotypic Differences in Double-Strand Break Repair Using Radiation-Induced γH2A.X Foci

por Markunas, Christina A., Umbach, David M., Xu, Zongli, Taylor, Jack A.
Publicado 2008

CDSeqR: fast complete deconvolution for gene expression data from bulk tissues

por Kang, Kai, Huang, Caizhi, Li, Yuanyuan, Umbach, David M., Li, Leping
Publicado 2021

SSAVE: A tool for analysis and visualization of sleep periods using electroencephalography data

por Talukder, Amlan, Li, Yuanyuan, Yeung, Deryck, Umbach, David M., Fan, Zheng, Li, Leping
Publicado 2023

Characterization of constitutive CTCF/cohesin loci: a possible role in establishing topological domains in mammalian genomes

por Li, Yuanyuan, Huang, Weichun, Niu, Liang, Umbach, David M, Covo, Shay, Li, Leping
Publicado 2013

Association of Lead Exposure with Survival in Amyotrophic Lateral Sclerosis

por Kamel, Freya, Umbach, David M., Stallone, Lillian, Richards, Marie, Hu, Howard, Sandler, Dale P.
Publicado 2008

Putative biomarkers for predicting tumor sample purity based on gene expression data

por Li, Yuanyuan, Umbach, David M., Bingham, Adrienna, Li, Qi-Jing, Zhuang, Yuan, Li, Leping
Publicado 2019

Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines

por Li, Yuanyuan, Umbach, David M., Krahn, Juno M., Shats, Igor, Li, Xiaoling, Li, Leping
Publicado 2021

Efficiently identifying genome-wide changes with next-generation sequencing data

por Huang, Weichun, Umbach, David M., Vincent Jordan, Nicole, Abell, Amy N., Johnson, Gary L., Li, Leping
Publicado 2011

A comprehensive genomic pan-cancer classification using The Cancer Genome Atlas gene expression data

por Li, Yuanyuan, Kang, Kai, Krahn, Juno M., Croutwater, Nicole, Lee, Kevin, Umbach, David M., Li, Leping
Publicado 2017

Workplace Exposures and the Risk of Amyotrophic Lateral Sclerosis

por Fang, Fang, Quinlan, Patricia, Ye, Weimin, Barber, Marie K., Umbach, David M., Sandler, Dale P., Kamel, Freya
Publicado 2009

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data

por Kang, Kai, Meng, Qian, Shats, Igor, Umbach, David M., Li, Melissa, Li, Yuanyuan, Li, Xiaoling, Li, Leping
Publicado 2019

Estimating the Effects of Soil Remediation on Children’s Blood Lead near a Former Lead Smelter in Omaha, Nebraska, USA

por Ye, Dongni, Brown, James S., Umbach, David M., Adams, John, Thayer, William, Follansbee, Mark H., Kirrane, Ellen F.
Publicado 2022

Depot Medroxyprogesterone Acetate Use and the Development and Progression of Uterine Leiomyoma

por Harmon, Quaker E., Patchel, Stacy A., Zhao, Shanshan, Umbach, David M., Cooper, Tracy E., Baird, Donna D.
Publicado 2022

Urogenital Epithelial Cells as Simple Markers of Estrogen Response in Infants: Methods and Applications

por Adgent, Margaret A., Flake, Gordon P., Umbach, David M., Stallings, Virginia A., Bernbaum, Judy C., Rogan, Walter J.
Publicado 2013

Asymmetry in Family History Implicates Nonstandard Genetic Mechanisms: Application to the Genetics of Breast Cancer

por Weinberg, Clarice R., Shi, Min, DeRoo, Lisa A., Taylor, Jack A., Sandler, Dale P., Umbach, David M.
Publicado 2014