snp-search: simple processing, manipulation and searching of SNPs from high-throughput sequencing

por Al-Shahib, Ali, Underwood, Anthony
Publicado 2013

The Impact of Pandemic Influenza H1N1 on Health-Related Quality of Life: A Prospective Population-Based Study

por van Hoek, Albert Jan, Underwood, Anthony, Jit, Mark, Miller, Elizabeth, Edmunds, W. John
Publicado 2011

Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing

por Underwood, Anthony P, Jones, Garan, Mentasti, Massimo, Fry, Norman K, Harrison, Timothy G
Publicado 2013

Genomic determination of minimum multi-locus sequence typing schemas to represent the genomic phylogeny of Mycoplasma hominis

por Jironkin, Aleksey, Brown, Rebecca J., Underwood, Anthony, Chalker, Victoria J., Spiller, Owen B.
Publicado 2016

VNTRDB: a bacterial variable number tandem repeat locus database

por Chang, Chia-Hung, Chang, Yu-Chung, Underwood, Anthony, Chiou, Chien-Shun, Kao, Cheng-Yan
Publicado 2007

Emergence of a novel lineage containing a prophage in emm/M3 group A Streptococcus associated with upsurge in invasive disease in the UK

por Al-Shahib, Ali, Underwood, Anthony, Afshar, Baharak, Turner, Claire E., Lamagni, Theresa, Sriskandan, Shiranee, Efstratiou, Androulla
Publicado 2016

Corrigendum: Emergence of a novel lineage containing a prophage in emm/M3 group A Streptococcus associated with upsurge in invasive disease in the UK

por Al-Shahib, Ali, Underwood, Anthony, Afshar, Baharak, Turner, Claire E., Lamagni​, Theresa, Sriskandan, Shiranee, Efstratiou, Androulla
Publicado 2016

Multiple-locus variable-number tandem-repeat analysis of Streptococcus pneumoniae and comparison with multiple loci sequence typing

por van Cuyck, Hélène, Pichon, Bruno, Leroy, Philippe, Granger-Farbos, Alexandra, Underwood, Anthony, Soullié, Bruno, Koeck, Jean-Louis
Publicado 2012

BugMat and FindNeighbour: command line and server applications for investigating bacterial relatedness

por Mazariegos-Canellas, Oriol, Do, Trien, Peto, Tim, Eyre, David W., Underwood, Anthony, Crook, Derrick, Wyllie, David H.
Publicado 2017

Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR)

por Abrudan, Monica, Matimba, Alice, Nikolic, Dusanka, Hughes, Darren, Argimón, Silvia, Kekre, Mihir, Underwood, Anthony, Aanensen, David M
Publicado 2021

Evolutionary Pathways of the Pandemic Influenza A (H1N1) 2009 in the UK

por Galiano, Monica, Agapow, Paul-Michael, Thompson, Catherine, Platt, Steven, Underwood, Anthony, Ellis, Joanna, Myers, Richard, Green, Jonathan, Zambon, Maria
Publicado 2011

Whole-Genome Sequencing and Epidemiological Analysis Do Not Provide Evidence for Cross-transmission of Mycobacterium abscessus in a Cohort of Pediatric Cystic Fibrosis Patients

por Harris, Kathryn A., Underwood, Anthony, Kenna, Dervla T. D., Brooks, Anthony, Kavaliunaite, Ema, Kapatai, Georgia, Tewolde, Rediat, Aurora, Paul, Dixon, Garth
Publicado 2015

Whole genome sequencing of Streptococcus pneumoniae: development, evaluation and verification of targets for serogroup and serotype prediction using an automated pipeline

por Kapatai, Georgia, Sheppard, Carmen L., Al-Shahib, Ali, Litt, David J., Underwood, Anthony P., Harrison, Timothy G., Fry, Norman K.
Publicado 2016

MOST: a modified MLST typing tool based on short read sequencing

por Tewolde, Rediat, Dallman, Timothy, Schaefer, Ulf, Sheppard, Carmen L., Ashton, Philip, Pichon, Bruno, Ellington, Matthew, Swift, Craig, Green, Jonathan, Underwood, Anthony
Publicado 2016

Enteroaggregative Escherichia coli Have Evolved Independently as Distinct Complexes within the E. coli Population with Varying Ability to Cause Disease

por Chattaway, Marie Anne, Jenkins, Claire, Rajendram, Dunstan, Cravioto, Alejandro, Talukder, Kaisar Ali, Dallman, Tim, Underwood, Anthony, Platt, Steve, Okeke, Iruka N., Wain, John
Publicado 2014

Evaluation of an Optimal Epidemiological Typing Scheme for Legionella pneumophila with Whole-Genome Sequence Data Using Validation Guidelines

por David, Sophia, Mentasti, Massimo, Tewolde, Rediat, Aslett, Martin, Harris, Simon R., Afshar, Baharak, Underwood, Anthony, Fry, Norman K., Parkhill, Julian, Harrison, Timothy G.
Publicado 2016

Enhanced nasopharyngeal infection and shedding associated with an epidemic lineage of emm3 group A Streptococcus

por Afshar, Baharak, Turner, Claire E., Lamagni, Theresa L., Smith, Ken C., Al-Shahib, Ali, Underwood, Anthony, Holden, Matthew T. G., Efstratiou, Androulla, Sriskandan, Shiranee
Publicado 2017

An Investigation of the Diversity of Strains of Enteroaggregative Escherichia coli Isolated from Cases Associated with a Large Multi-Pathogen Foodborne Outbreak in the UK

por Dallman, Timothy J., Chattaway, Marie A., Cowley, Lauren A., Doumith, Michel, Tewolde, Rediat, Wooldridge, David J., Underwood, Anthony, Ready, Derren, Wain, John, Foster, Kirsty, Grant, Kathie A., Jenkins, Claire
Publicado 2014

Novel multidrug-resistant sublineages of Staphylococcus aureus clonal complex 22 discovered in India

por Abrudan, Monica I., Shamanna, Varun, Prasanna, Akshatha, Underwood, Anthony, Argimón, Silvia, Nagaraj, Geetha, Di Gregorio, Sabrina, Govindan, Vandana, Vasanth, Ashwini, Dharmavaram, Sravani, Kekre, Mihir, Aanensen, David M., Ravikumar, K. L.
Publicado 2023

Circulation of Third-Generation Cephalosporin Resistant Salmonella Typhi in Mumbai, India

por Argimón, Silvia, Nagaraj, Geetha, Shamanna, Varun, Sravani, Dharmavaram, Vasanth, Ashwini Kodlipet, Prasanna, Akshatha, Poojary, Aruna, Bari, Anurag Kumar, Underwood, Anthony, Kekre, Mihir, Baker, Stephen, Aanensen, David M, Lingegowda, Ravikumar Kadahalli
Publicado 2021