Commonly used Hardy–Weinberg equilibrium filtering schemes impact population structure inferences using RADseq data

por Pearman, William S., Urban, Lara, Alexander, Alana
Publicado 2022

covRNA: discovering covariate associations in large-scale gene expression data

por Urban, Lara, Remmele, Christian W., Dittrich, Marcus, Schwarz, Roland F., Müller, Tobias
Publicado 2020

The Kipoi repository accelerates community exchange and reuse of predictive models for genomics

por Avsec, Žiga, Kreuzhuber, Roman, Israeli, Johnny, Xu, Nancy, Cheng, Jun, Shrikumar, Avanti, Banerjee, Abhimanyu, Kim, Daniel S., Beier, Thorsten, Urban, Lara, Kundaje, Anshul, Stegle, Oliver, Gagneur, Julien
Publicado 2019

Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

por Linker, Stephanie M., Urban, Lara, Clark, Stephen J., Chhatriwala, Mariya, Amatya, Shradha, McCarthy, Davis J., Ebersberger, Ingo, Vallier, Ludovic, Reik, Wolf, Stegle, Oliver, Bonder, Marc Jan
Publicado 2019

Hidden impacts of conservation management on fertility of the critically endangered kākāpō

por Digby, Andrew, Eason, Daryl, Catalina, Alejandro, Lierz, Michael, Galla, Stephanie, Urban, Lara, Le Lec, Marissa F., Guhlin, Joseph, Steeves, Tammy E., Dearden, Peter K., Joustra, Tineke, Lees, Caroline, Davis, Tane, Vercoe, Deidre
Publicado 2023

Evidence of two deeply divergent co-existing mitochondrial genomes in the Tuatara reveals an extremely complex genomic organization

por Macey, J. Robert, Pabinger, Stephan, Barbieri, Charles G., Buring, Ella S., Gonzalez, Vanessa L., Mulcahy, Daniel G., DeMeo, Dustin P., Urban, Lara, Hime, Paul M., Prost, Stefan, Elliott, Aaron N., Gemmell, Neil J.
Publicado 2021

Freshwater monitoring by nanopore sequencing

por Urban, Lara, Holzer, Andre, Baronas, J Jotautas, Hall, Michael B, Braeuninger-Weimer, Philipp, Scherm, Michael J, Kunz, Daniel J, Perera, Surangi N, Martin-Herranz, Daniel E, Tipper, Edward T, Salter, Susannah J, Stammnitz, Maximilian R
Publicado 2021

eLife’s new model and its impact on science communication

por Urban, Lara, De Niz, Mariana, Fernández-Chiappe, Florencia, Ebrahimi, Hedyeh, Han, Laura KM, Mehta, Devang, Mencia, Regina, Mittal, Divyansh, Ochola, Elizabeth, Paz Quezada, Carolina, Romani, Facundo, Sinapayen, Lana, Tay, Andy, Varma, Aalok, Yahia Mohamed Elkheir, Lamis
Publicado 2022

Real‐time genomics for One Health

por Urban, Lara, Perlas, Albert, Francino, Olga, Martí‐Carreras, Joan, Muga, Brenda A, Mwangi, Jenniffer W, Boykin Okalebo, Laura, Stanton, Jo‐Ann L, Black, Amanda, Waipara, Nick, Fontsere, Claudia, Eccles, David, Urel, Harika, Reska, Tim, Morales, Hernán E, Palmada‐Flores, Marc, Marques‐Bonet, Tomas, Watsa, Mrinalini, Libke, Zane, Erkenswick, Gideon, van Oosterhout, Cock
Publicado 2023

Genomic basis for RNA alterations in cancer

por Calabrese, Claudia, Davidson, Natalie R., Demircioğlu, Deniz, Fonseca, Nuno A., He, Yao, Kahles, André, Lehmann, Kjong-Van, Liu, Fenglin, Shiraishi, Yuichi, Soulette, Cameron M., Urban, Lara, Greger, Liliana, Li, Siliang, Liu, Dongbing, Perry, Marc D., Xiang, Qian, Zhang, Fan, Zhang, Junjun, Bailey, Peter, Erkek, Serap, Hoadley, Katherine A., Hou, Yong, Huska, Matthew R., Kilpinen, Helena, Korbel, Jan O., Marin, Maximillian G., Markowski, Julia, Nandi, Tannistha, Pan-Hammarström, Qiang, Pedamallu, Chandra Sekhar, Siebert, Reiner, Stark, Stefan G., Su, Hong, Tan, Patrick, Waszak, Sebastian M., Yung, Christina, Zhu, Shida, Awadalla, Philip, Creighton, Chad J., Meyerson, Matthew, Ouellette, B. F. Francis, Wu, Kui, Yang, Huanming, Brazma, Alvis, Brooks, Angela N., Göke, Jonathan, Rätsch, Gunnar, Schwarz, Roland F., Stegle, Oliver, Zhang, Zemin
Publicado 2020

Author Correction: Genomic basis for RNA alterations in cancer

por Calabrese, Claudia, Davidson, Natalie R., Demircioğlu, Deniz, Fonseca, Nuno A., He, Yao, Kahles, André, Lehmann, Kjong-Van, Liu, Fenglin, Shiraishi, Yuichi, Soulette, Cameron M., Urban, Lara, Greger, Liliana, Li, Siliang, Liu, Dongbing, Perry, Marc D., Xiang, Qian, Zhang, Fan, Zhang, Junjun, Bailey, Peter, Erkek, Serap, Hoadley, Katherine A., Hou, Yong, Huska, Matthew R., Kilpinen, Helena, Korbel, Jan O., Marin, Maximillian G., Markowski, Julia, Nandi, Tannistha, Pan-Hammarström, Qiang, Pedamallu, Chandra Sekhar, Siebert, Reiner, Stark, Stefan G., Su, Hong, Tan, Patrick, Waszak, Sebastian M., Yung, Christina, Zhu, Shida, Awadalla, Philip, Creighton, Chad J., Meyerson, Matthew, Ouellette, B. F. Francis, Wu, Kui, Yang, Huanming, Brazma, Alvis, Brooks, Angela N., Göke, Jonathan, Rätsch, Gunnar, Schwarz, Roland F., Stegle, Oliver, Zhang, Zemin
Publicado 2023