Computer Modeling Describes Gravity-Related Adaptation in Cell Cultures

por Alexandrov, Ludmil B., Alexandrova, Stoyana, Usheva, Anny
Publicado 2009

Computing DNA duplex instability profiles efficiently with a two-state model: trends of promoters and binding sites

por Kantorovitz, Miriam R, Rapti, Zoi, Gelev, Vladimir, Usheva, Anny
Publicado 2010

The Bile Acid Synthesis Pathway Is Present and Functional in the Human Ovary

por Smith, Laura P., Nierstenhoefer, Maik, Yoo, Sang Wook, Penzias, Alan S., Tobiasch, Edda, Usheva, Anny
Publicado 2009

Toward a Detailed Description of the Thermally Induced Dynamics of the Core Promoter

por Alexandrov, Boian S., Gelev, Vladimir, Yoo, Sang Wook, Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publicado 2009

Examining DNA Breathing with pyDNA-EPBD

por Kabir, Anowarul, Bhattarai, Manish, Rasmussen, Kim Ø., Shehu, Amarda, Usheva, Anny, Bishop, Alan R, Alexandrov, Boian S
Publicado 2023

A nonlinear dynamic model of DNA with a sequence-dependent stacking term

por Alexandrov, Boian S., Gelev, Vladimir, Monisova, Yevgeniya, Alexandrov, Ludmil B., Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publicado 2009

DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells

por Alexandrov, Boian S., Fukuyo, Yayoi, Lange, Martin, Horikoshi, Nobuo, Gelev, Vladimir, Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publicado 2012

Impaired cardiac glycolysis and glycogen depletion are linked to poor myocardial outcomes in juvenile male swine with metabolic syndrome and ischemia

por Broadwin, Mark, Harris, Dwight D., Sabe, Sharif A., Sengun, Elif, Sylvestre, Amber J., Alexandrov, Boian S., Selke, Frank W., Usheva, Anny
Publicado 2023

DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation

por Alexandrov, Boian S., Gelev, Vladimir, Yoo, Sang Wook, Alexandrov, Ludmil B., Fukuyo, Yayoi, Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publicado 2010

Metabolomics and the pig model reveal aberrant cardiac energy metabolism in metabolic syndrome

por Karimi, Maryam, Petkova, Victoria, Asara, John M., Griffin, Michael J., Sellke, Frank W., Bishop, Alan R., Alexandrov, Boian S., Usheva, Anny
Publicado 2020

Genes invoked in the ovarian transition to menopause

por Zimon, Alison, Erat, Anna, Wald, Tiffany Von, Bissell, Brad, Koulova, Anna, Choi, Chu H., Bachvarov, Dimcho, Reindollar, Richard H., Usheva, Anny
Publicado 2006

DNA Dynamics Is Likely to Be a Factor in the Genomic Nucleotide Repeats Expansions Related to Diseases

por Alexandrov, Boian S., Valtchinov, Vlad I., Alexandrov, Ludmil B., Gelev, Vladimir, Dagon, Yossi, Bock, Jonathan, Kohane, Isaac S., Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publicado 2011

Correction: DNA Dynamics Is Likely to Be a Factor in the Genomic Nucleotide Repeats Expansions Related to Diseases

por Alexandrov, Boian S., Valtchinov, Vlad I., Alexandrov, Ludmil B., Gelev, Vladimir, Dagon, Yossi, Bock, Jonathan, Kohane, Isaac S., Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publicado 2011

The cardiac molecular setting of metabolic syndrome in pigs reveals disease susceptibility and suggests mechanisms that exacerbate COVID-19 outcomes in patients

por Ziegler, Olivia, Sriram, Nivedita, Gelev, Vladimir, Radeva, Denitsa, Todorov, Kostadin, Feng, Jun, Sellke, Frank W., Robson, Simon C., Hiromura, Makoto, Alexandrov, Boian S., Usheva, Anny
Publicado 2021

Author Correction: The cardiac molecular setting of metabolic syndrome in pigs reveals disease susceptibility and suggests mechanisms that exacerbate COVID-19 outcomes in patients

por Ziegler, Olivia, Sriram, Nivedita, Gelev, Vladimir, Radeva, Denitsa, Todorov, Kostadin, Feng, Jun, Sellke, Frank W., Robson, Simon C., Hiromura, Makoto, Alexandrov, Boian S., Usheva, Anny
Publicado 2021

A new paradigm for transcription factor TFIIB functionality

por Gelev, Vladimir, Zabolotny, Janice M., Lange, Martin, Hiromura, Makoto, Yoo, Sang Wook, Orlando, Joseph S., Kushnir, Anna, Horikoshi, Nobuo, Paquet, Eric, Bachvarov, Dimcho, Schaffer, Priscilla A., Usheva, Anny
Publicado 2014

Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics

por Nowak-Lovato, Kristy, Alexandrov, Ludmil B., Banisadr, Afsheen, Bauer, Amy L., Bishop, Alan R., Usheva, Anny, Mu, Fangping, Hong-Geller, Elizabeth, Rasmussen, Kim Ø., Hlavacek, William S., Alexandrov, Boian S.
Publicado 2013

Soluble Ecto-5′-nucleotidase (5′-NT), Alkaline Phosphatase, and Adenosine Deaminase (ADA1) Activities in Neonatal Blood Favor Elevated Extracellular Adenosine

por Pettengill, Matthew, Robson, Simon, Tresenriter, Megan, Millán, José Luis, Usheva, Anny, Bingham, Taiese, Belderbos, Mirjam, Bergelson, Ilana, Burl, Sarah, Kampmann, Beate, Gelinas, Laura, Kollmann, Tobias, Bont, Louis, Levy, Ofer
Publicado 2013

Robust effect of metabolic syndrome on major metabolic pathways in the myocardium

por Karimi, Maryam, Pavlov, Vasile I., Ziegler, Olivia, Sriram, Nivedita, Yoon, Se-Young, Agbortoko, Vahid, Alexandrova, Stoiana, Asara, John, Sellke, Frank W., Sturek, Michael, Feng, Jun, Alexandrov, Boian S., Usheva, Anny
Publicado 2019

Adenosine generation catalyzed by CD39 and CD73 expressed on regulatory T cells mediates immune suppression

por Deaglio, Silvia, Dwyer, Karen M., Gao, Wenda, Friedman, David, Usheva, Anny, Erat, Anna, Chen, Jiang-Fan, Enjyoji, Keiichii, Linden, Joel, Oukka, Mohamed, Kuchroo, Vijay K., Strom, Terry B., Robson, Simon C.
Publicado 2007