DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder

por Varadi, Mihaly, Guharoy, Mainak, Zsolyomi, Fruzsina, Tompa, Peter
Publicado 2015

Computational approaches for inferring the functions of intrinsically disordered proteins

por Varadi, Mihaly, Vranken, Wim, Guharoy, Mainak, Tompa, Peter
Publicado 2015

Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins

por Varadi, Mihaly, Zsolyomi, Fruzsina, Guharoy, Mainak, Tompa, Peter
Publicado 2015

Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability

por Pancsa, Rita, Varadi, Mihaly, Tompa, Peter, Vranken, Wim F.
Publicado 2016

Affinity purification of human m-calpain through an intrinsically disordered inhibitor, calpastatin

por Nguyen, Hung Huy, Varadi, Mihaly, Tompa, Peter, Pauwels, Kris
Publicado 2017

Unified access to up-to-date residue-level annotations from UniProtKB and other biological databases for PDB data

por Choudhary, Preeti, Anyango, Stephen, Berrisford, John, Tolchard, James, Varadi, Mihaly, Velankar, Sameer
Publicado 2023

AmyPro: a database of proteins with validated amyloidogenic regions

por Varadi, Mihaly, De Baets, Greet, Vranken, Wim F, Tompa, Peter, Pancsa, Rita
Publicado 2018

Comprehensive Collection and Prediction of ABC Transmembrane Protein Structures in the AI Era of Structural Biology

por Tordai, Hedvig, Suhajda, Erzsebet, Sillitoe, Ian, Nair, Sreenath, Varadi, Mihaly, Hegedus, Tamas
Publicado 2022

PDBeCIF: an open-source mmCIF/CIF parsing and processing package

por van Ginkel, Glen, Pravda, Lukáš, Dana, José M., Varadi, Mihaly, Keller, Peter, Anyango, Stephen, Velankar, Sameer
Publicado 2021

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies

por Waman, Vaishali P, Sen, Neeladri, Varadi, Mihaly, Daina, Antoine, Wodak, Shoshana J, Zoete, Vincent, Velankar, Sameer, Orengo, Christine
Publicado 2020

PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data

por Nair, Sreenath, Váradi, Mihály, Nadzirin, Nurul, Pravda, Lukáš, Anyango, Stephen, Mir, Saqib, Berrisford, John, Armstrong, David, Gutmanas, Aleksandras, Velankar, Sameer
Publicado 2021

PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank

por Kunnakkattu, Ibrahim Roshan, Choudhary, Preeti, Pravda, Lukas, Nadzirin, Nurul, Smart, Oliver S., Yuan, Qi, Anyango, Stephen, Nair, Sreenath, Varadi, Mihaly, Velankar, Sameer
Publicado 2023

Interaction between the scaffold proteins CBP by IQGAP1 provides an interface between gene expression and cytoskeletal activity

por Kosol, Simone, Contreras-Martos, Sara, Piai, Alessandro, Varadi, Mihaly, Lazar, Tamas, Bekesi, Angela, Lebrun, Pierre, Felli, Isabella C., Pierattelli, Roberta, Tompa, Peter
Publicado 2020

Clustering predicted structures at the scale of the known protein universe

por Barrio-Hernandez, Inigo, Yeo, Jingi, Jänes, Jürgen, Mirdita, Milot, Gilchrist, Cameron L. M., Wein, Tanita, Varadi, Mihaly, Velankar, Sameer, Beltrao, Pedro, Steinegger, Martin
Publicado 2023

Linking functions: an additional role for an intrinsically disordered linker domain in the transcriptional coactivator CBP

por Contreras-Martos, Sara, Piai, Alessandro, Kosol, Simone, Varadi, Mihaly, Bekesi, Angela, Lebrun, Pierre, Volkov, Alexander N., Gevaert, Kris, Pierattelli, Roberta, Felli, Isabella C., Tompa, Peter
Publicado 2017

Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data

por Appasamy, Sri Devan, Berrisford, John, Gaborova, Romana, Nair, Sreenath, Anyango, Stephen, Grudinin, Sergei, Deshpande, Mandar, Armstrong, David, Pidruchna, Ivanna, Ellaway, Joseph I. J., Leines, Grisell Díaz, Gupta, Deepti, Harrus, Deborah, Varadi, Mihaly, Velankar, Sameer
Publicado 2023

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins

por Varadi, Mihaly, Kosol, Simone, Lebrun, Pierre, Valentini, Erica, Blackledge, Martin, Dunker, A. Keith, Felli, Isabella C., Forman-Kay, Julie D., Kriwacki, Richard W., Pierattelli, Roberta, Sussman, Joel, Svergun, Dmitri I., Uversky, Vladimir N., Vendruscolo, Michele, Wishart, David, Wright, Peter E., Tompa, Peter
Publicado 2014

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe

por Mir, Saqib, Alhroub, Younes, Anyango, Stephen, Armstrong, David R, Berrisford, John M, Clark, Alice R, Conroy, Matthew J, Dana, Jose M, Deshpande, Mandar, Gupta, Deepti, Gutmanas, Aleksandras, Haslam, Pauline, Mak, Lora, Mukhopadhyay, Abhik, Nadzirin, Nurul, Paysan-Lafosse, Typhaine, Sehnal, David, Sen, Sanchayita, Smart, Oliver S, Varadi, Mihaly, Kleywegt, Gerard J, Velankar, Sameer
Publicado 2018

AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

por Varadi, Mihaly, Anyango, Stephen, Deshpande, Mandar, Nair, Sreenath, Natassia, Cindy, Yordanova, Galabina, Yuan, David, Stroe, Oana, Wood, Gemma, Laydon, Agata, Žídek, Augustin, Green, Tim, Tunyasuvunakool, Kathryn, Petersen, Stig, Jumper, John, Clancy, Ellen, Green, Richard, Vora, Ankur, Lutfi, Mira, Figurnov, Michael, Cowie, Andrew, Hobbs, Nicole, Kohli, Pushmeet, Kleywegt, Gerard, Birney, Ewan, Hassabis, Demis, Velankar, Sameer
Publicado 2021

PDBe and PDBe‐KB: Providing high‐quality, up‐to‐date and integrated resources of macromolecular structures to support basic and applied research and education

por Varadi, Mihaly, Anyango, Stephen, Appasamy, Sri Devan, Armstrong, David, Bage, Marcus, Berrisford, John, Choudhary, Preeti, Bertoni, Damian, Deshpande, Mandar, Leines, Grisell Diaz, Ellaway, Joseph, Evans, Genevieve, Gaborova, Romana, Gupta, Deepti, Gutmanas, Aleksandras, Harrus, Deborah, Kleywegt, Gerard J., Bueno, Weslley Morellato, Nadzirin, Nurul, Nair, Sreenath, Pravda, Lukas, Afonso, Marcelo Querino Lima, Sehnal, David, Tanweer, Ahsan, Tolchard, James, Abrams, Charlotte, Dunlop, Roisin, Velankar, Sameer
Publicado 2022