Sifter-T: A scalable framework for phylogenomic probabilistic protein domain functional annotation

por Almeida-E-Silva, Danillo C, Vêncio, Ricardo Z N
Publicado 2015

Low Salt Influences Archaellum-Based Motility, Glycerol Metabolism, and Gas Vesicles Biogenesis in Halobacterium salinarum

por Onga, Evelyn Ayumi, Vêncio, Ricardo Z. N., Koide, Tie
Publicado 2022

Transcription Start Site Associated RNAs (TSSaRNAs) Are Ubiquitous in All Domains of Life

por Zaramela, Livia S., Vêncio, Ricardo Z. N., ten-Caten, Felipe, Baliga, Nitin S., Koide, Tie
Publicado 2014

Lineage relationship between prostate adenocarcinoma and small cell carcinoma

por Kanan, Adelle D., Corey, Eva, Vêncio, Ricardo Z. N., Ishwar, Arjun, Liu, Alvin Y.
Publicado 2019

Halobacterium salinarum and Haloferax volcanii Comparative Transcriptomics Reveals Conserved Transcriptional Processing Sites

por Ibrahim, Amr Galal Abd El-Raheem, Vêncio, Ricardo Z. N., Lorenzetti, Alan P. R., Koide, Tie
Publicado 2021

Common molecular pathways involved in human CD133+/CD34+ progenitor cell expansion and cancer

por Okamoto, Oswaldo Keith, Carvalho, Ana Carolina SR, Marti, Luciana C, Vêncio, Ricardo Z, Moreira-Filho, Carlos A
Publicado 2007

Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea

por Ten-Caten, Felipe, Vêncio, Ricardo Z. N., Lorenzetti, Alan Péricles R., Zaramela, Livia Soares, Santana, Ana Carolina, Koide, Tie
Publicado 2018

A Methodology for the Development of RESTful Semantic Web Services for Gene Expression Analysis

por Guardia, Gabriela D. A., Pires, Luís Ferreira, Vêncio, Ricardo Z. N., Malmegrim, Kelen C. R., de Farias, Cléver R. G.
Publicado 2015

Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea

por Gomes-Filho, José Vicente, Zaramela, Livia Soares, Italiani, Valéria Cristina da Silva, Baliga, Nitin S, Vêncio, Ricardo Z N, Koide, Tie
Publicado 2015

The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1

por de Almeida, João Paulo Pereira, Vêncio, Ricardo Z. N., Lorenzetti, Alan P. R., ten-Caten, Felipe, Gomes-Filho, José Vicente, Koide, Tie
Publicado 2019

ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics

por Silva, Ricardo R., Jourdan, Fabien, Salvanha, Diego M., Letisse, Fabien, Jamin, Emilien L., Guidetti-Gonzalez, Simone, Labate, Carlos A., Vêncio, Ricardo Z. N.
Publicado 2014

Differential Inductive Signaling of CD90(+) Prostate Cancer-Associated Fibroblasts Compared to Normal Tissue Stromal Mesenchyme Cells

por Pascal, Laura E., Ai, Junkui, Vêncio, Ricardo Z. N., Vêncio, Eneida F., Zhou, Yong, Page, Laura S., True, Lawrence D., Wang, Zhou, Liu, Alvin Y.
Publicado 2011

SAT-LB36 Distinct Vitamin D Receptor DNA Methylation Profiles Are Associated With the Outcome of Pediatric Patients With Adrenocortical Tumors

por Bueno, Ana Carolina, Stecchini, Monica Freire, de Lima Neto, Daniel F, Coeli-Lacchini, Fernanda B, Ramalho, Leandra N Z, Moreira, Ayrton Custodio, Brandalise, Silvia, Yunes, Andres, Castro, Margaret De, Vêncio, Ricardo Z N, Antonini, Sonir R R
Publicado 2020

A Genome-Scale Atlas Reveals Complex Interplay of Transcription and Translation in an Archaeon

por Lorenzetti, Alan P. R., Kusebauch, Ulrike, Zaramela, Lívia S., Wu, Wei-Ju, de Almeida, João P. P., Turkarslan, Serdar, L. G. de Lomana, Adrián, Gomes-Filho, José V., Vêncio, Ricardo Z. N., Moritz, Robert L., Koide, Tie, Baliga, Nitin S.
Publicado 2023

Environmental Influences Measured by Epigenetic Clock and Vulnerability Components at Birth Impact Clinical ASD Heterogeneity

por Neri de Souza Reis, Viviane, Tahira, Ana Carolina, Daguano Gastaldi, Vinícius, Mari, Paula, Portolese, Joana, Feio dos Santos, Ana Cecilia, Lisboa, Bianca, Mari, Jair, Caetano, Sheila C., Brunoni, Décio, Bordini, Daniela, Silvestre de Paula, Cristiane, Vêncio, Ricardo Z. N., Quackenbush, John, Brentani, Helena
Publicado 2021

Plasmodium vivax spleen-dependent genes encode antigens associated with cytoadhesion and clinical protection

por Fernandez-Becerra, Carmen, Bernabeu, Maria, Castellanos, Angélica, Correa, Bruna R., Obadia, Thomas, Ramirez, Miriam, Rui, Edmilson, Hentzschel, Franziska, López-Montañés, Maria, Ayllon-Hermida, Alberto, Martin-Jaular, Lorena, Elizalde-Torrent, Aleix, Siba, Peter, Vêncio, Ricardo Z., Arevalo-Herrera, Myriam, Herrera, Sócrates, Alonso, Pedro L., Mueller, Ivo, del Portillo, Hernando A.
Publicado 2020

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

por Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T., Bankapur, Asma R., D’Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S., Kahanda, Indika, Verspoor, Karin M., Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M. E., Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T., Chapman, Samuel, BKC, Dukka, Khan, Ishita K., Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E., Hieta, Reija, Legge, Duncan, Lovering, Ruth C., Magrane, Michele, Melidoni, Anna N., Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L., Lee, David, Lees, Jonathan G., Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E., Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E., Pavlidis, Paul, Feng, Shou, Cejuela, Juan M., Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel, Piovesan, Damiano, Tosatto, Silvio C.E., del Pozo, Angela, Fernández, José M., Maietta, Paolo, Valencia, Alfonso, Tress, Michael L., Benso, Alfredo, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W., van Dijk, Aalt D. J., Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C., Vencio, Ricardo Z. N., Sharan, Malvika, Vogel, Jörg, Kansakar, Lakesh, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J. E., Wass, Mark N., Huntley, Rachael P., Martin, Maria J., O’Donovan, Claire, Robinson, Peter N., Moreau, Yves, Tramontano, Anna, Babbitt, Patricia C., Brenner, Steven E., Linial, Michal, Orengo, Christine A., Rost, Burkhard, Greene, Casey S., Mooney, Sean D., Friedberg, Iddo, Radivojac, Predrag
Publicado 2016