GRAMM-X public web server for protein–protein docking

por Tovchigrechko, Andrey, Vakser, Ilya A.
Publicado 2006

DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking

por Liu, Shiyong, Vakser, Ilya A
Publicado 2011

Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling

por Kundrotas, Petras J., Vakser, Ilya A.
Publicado 2010

GWIDD: Genome-wide protein docking database

por Kundrotas, Petras J., Zhu, Zhengwei, Vakser, Ilya A.
Publicado 2010

Protein Docking by the Interface Structure Similarity: How Much Structure Is Needed?

por Sinha, Rohita, Kundrotas, Petras J., Vakser, Ilya A.
Publicado 2012

GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions

por Kundrotas, Petras J, Zhu, Zhengwei, Vakser, Ilya A
Publicado 2012

DOCKGROUND membrane protein-protein set

por Kotthoff, Ian, Kundrotas, Petras J., Vakser, Ilya A.
Publicado 2022

Text Mining for Protein Docking

por Badal, Varsha D., Kundrotas, Petras J., Vakser, Ilya A.
Publicado 2015

Natural language processing in text mining for structural modeling of protein complexes

por Badal, Varsha D., Kundrotas, Petras J., Vakser, Ilya A.
Publicado 2018

Size of the protein-protein energy funnel in crowded environment

por Jenkins, Nathan W., Kundrotas, Petras J., Vakser, Ilya A.
Publicado 2022

Template-Based Modeling of Protein-RNA Interactions

por Zheng, Jinfang, Kundrotas, Petras J., Vakser, Ilya A., Liu, Shiyong
Publicado 2016

Correlation analysis of the side-chains conformational distribution in bound and unbound proteins

por Kirys, Tatsiana, Ruvinsky, Anatoly M, Tuzikov, Alexander V, Vakser, Ilya A
Publicado 2012

Docking-based long timescale simulation of cell-size protein systems at atomic resolution

por Vakser, Ilya A., Grudinin, Sergei, Jenkins, Nathan W., Kundrotas, Petras J., Deeds, Eric J.
Publicado 2022

Simulated unbound structures for benchmarking of protein docking in the Dockground resource

por Kirys, Tatsiana, Ruvinsky, Anatoly M., Singla, Deepak, Tuzikov, Alexander V., Kundrotas, Petras J., Vakser, Ilya A.
Publicado 2015

GWYRE: A Resource for Mapping Variants onto Experimental and Modeled Structures of Human Protein Complexes

por Malladi, Sukhaswami, Powell, Harold R., David, Alessia, Islam, Suhail A., Copeland, Matthew M., Kundrotas, Petras J., Sternberg, Michael J.E., Vakser, Ilya A.
Publicado 2022

PhyreRisk: A Dynamic Web Application to Bridge Genomics, Proteomics and 3D Structural Data to Guide Interpretation of Human Genetic Variants

por Ofoegbu, Tochukwu C., David, Alessia, Kelley, Lawrence A., Mezulis, Stefans, Islam, Suhail A., Mersmann, Sophia F., Strömich, Léonie, Vakser, Ilya A., Houlston, Richard S., Sternberg, Michael J.E.
Publicado 2019

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

por Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.
Publicado 2016