Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

por Bogaerts, Bert, Winand, Raf, Van Braekel, Julien, Hoffman, Stefan, Roosens, Nancy H. C., De Keersmaecker, Sigrid C. J., Marchal, Kathleen, Vanneste, Kevin
Publicado 2021

Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database

por Saltykova, Assia, Van Braekel, Julien, Papazova, Nina, Fraiture, Marie-Alice, Deforce, Dieter, Vanneste, Kevin, De Keersmaecker, Sigrid C.J., Roosens, Nancy H.
Publicado 2022

Targeting the 16S rRNA Gene for Bacterial Identification in Complex Mixed Samples: Comparative Evaluation of Second (Illumina) and Third (Oxford Nanopore Technologies) Generation S...

por Winand, Raf, Bogaerts, Bert, Hoffman, Stefan, Lefevre, Loïc, Delvoye, Maud, Van Braekel, Julien, Fu, Qiang, Roosens, Nancy HC, De Keersmaecker, Sigrid CJ, Vanneste, Kevin
Publicado 2019

Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circ...

por Bogaerts, Bert, Winand, Raf, Van Braekel, Julien, Mattheus, Wesley, De Keersmaecker, Sigrid C. J., Roosens, Nancy H. C., Marchal, Kathleen, Vanneste, Kevin, Ceyssens, Pieter-Jan
Publicado 2021

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Nei...

por Bogaerts, Bert, Winand, Raf, Fu, Qiang, Van Braekel, Julien, Ceyssens, Pieter-Jan, Mattheus, Wesley, Bertrand, Sophie, De Keersmaecker, Sigrid C. J., Roosens, Nancy H. C., Vanneste, Kevin
Publicado 2019

A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized...

por Bogaerts, Bert, Delcourt, Thomas, Soetaert, Karine, Boarbi, Samira, Ceyssens, Pieter-Jan, Winand, Raf, Van Braekel, Julien, De Keersmaecker, Sigrid C. J., Roosens, Nancy H. C., Marchal, Kathleen, Mathys, Vanessa, Vanneste, Kevin
Publicado 2021

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conv...

por Bogaerts, Bert, Nouws, Stéphanie, Verhaegen, Bavo, Denayer, Sarah, Van Braekel, Julien, Winand, Raf, Fu, Qiang, Crombé, Florence, Piérard, Denis, Marchal, Kathleen, Roosens, Nancy H. C., De Keersmaecker, Sigrid C. J., Vanneste, Kevin
Publicado 2021