Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions

por Van Nostrand, Eric L., Kim, Stuart K.
Publicado 2013

Advances and challenges in the detection of transcriptome‐wide protein–RNA interactions

por Wheeler, Emily C., Van Nostrand, Eric L., Yeo, Gene W.
Publicado 2017

Roles of the Developmental Regulator unc-62/Homothorax in Limiting Longevity in Caenorhabditis elegans

por Van Nostrand, Eric L., Sánchez-Blanco, Adolfo, Wu, Beijing, Nguyen, Andy, Kim, Stuart K.
Publicado 2013

The Inflammatory Transcription Factors NFκB, STAT1 and STAT3 Drive Age-Associated Transcriptional Changes in the Human Kidney

por O’Brown, Zach K., Van Nostrand, Eric L., Higgins, John P., Kim, Stuart K.
Publicado 2015

Deactivation of the GATA Transcription Factor ELT-2 Is a Major Driver of Normal Aging in C. elegans

por Mann, Frederick G., Van Nostrand, Eric L., Friedland, Ari E., Liu, Xiao, Kim, Stuart K.
Publicado 2016

RBP-Maps enables robust generation of splicing regulatory maps

por Yee, Brian A., Pratt, Gabriel A., Graveley, Brenton R., Van Nostrand, Eric L., Yeo, Gene W.
Publicado 2019

AMPK regulation of Raptor and TSC2 mediate metformin effects on transcriptional control of anabolism and inflammation

por Van Nostrand, Jeanine L., Hellberg, Kristina, Luo, En-Ching, Van Nostrand, Eric L., Dayn, Alina, Yu, Jingting, Shokhirev, Maxim N., Dayn, Yelena, Yeo, Gene W., Shaw, Reuben J.
Publicado 2020

Pooled CRISPR screens with imaging on microRaft arrays reveals stress granule-regulatory factors

por Wheeler, Emily C., Vu, Anthony Q., Einstein, Jaclyn M., DiSalvo, Matthew, Ahmed, Noorsher, Van Nostrand, Eric L., Shishkin, Alexander A., Jin, Wenhao, Allbritton, Nancy L., Yeo, Gene W.
Publicado 2020

Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism

por Scott, Daniel D., Trahan, Christian, Zindy, Pierre J., Aguilar, Lisbeth C., Delubac, Marc Y., Van Nostrand, Eric L., Adivarahan, Srivathsan, Wei, Karen E., Yeo, Gene W., Zenklusen, Daniel, Oeffinger, Marlene
Publicado 2017

Regulation of RNA editing by RNA-binding proteins in human cells

por Quinones-Valdez, Giovanni, Tran, Stephen S., Jun, Hyun-Ik, Bahn, Jae Hoon, Yang, Ei-Wen, Zhan, Lijun, Brümmer, Anneke, Wei, Xintao, Van Nostrand, Eric L., Pratt, Gabriel A., Yeo, Gene W., Graveley, Brenton R., Xiao, Xinshu
Publicado 2019

ADAR and hnRNPC deficiency synergize in activating endogenous dsRNA-induced type I IFN responses

por Herzner, Anna-Maria, Khan, Zia, Van Nostrand, Eric L., Chan, Sara, Cuellar, Trinna, Chen, Ronald, Pechuan-Jorge, Ximo, Komuves, Laszlo, Solon, Margaret, Modrusan, Zora, Haley, Benjamin, Yeo, Gene W., Behrens, Timothy W., Albert, Matthew L.
Publicado 2021

Robust transcriptome-wide discovery of RNA binding protein binding sites with enhanced CLIP (eCLIP)

por Van Nostrand, Eric L., Pratt, Gabriel A., Shishkin, Alexander A., Gelboin-Burkhart, Chelsea, Fang, Mark Y., Sundararaman, Balaji, Blue, Steven M., Nguyen, Thai B., Surka, Christine, Elkins, Keri, Stanton, Rebecca, Rigo, Frank, Guttman, Mitchell, Yeo, Gene W.
Publicado 2016

Widespread RNA editing dysregulation in brains from autistic individuals

por Tran, Stephen S., Jun, Hyun-Ik, Bahn, Jae Hoon, Azghadi, Adel, Ramaswami, Gokul, Van Nostrand, Eric L., Nguyen, Thai B., Hsiao, Yun-Hua E., Lee, Changhoon, Pratt, Gabriel A., Martínez-Cerdeño, Verónica, Hagerman, Randi J., Yeo, Gene W., Geschwind, Daniel H., Xiao, Xinshu
Publicado 2018

RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins

por Benoit Bouvrette, Louis Philip, Wang, Xiaofeng, Boulais, Jonathan, Kong, Jian, Syed, Easin Uddin, Blue, Steven M, Zhan, Lijun, Olson, Sara, Stanton, Rebecca, Wei, Xintao, Yee, Brian, Van Nostrand, Eric L, Fu, Xiang-Dong, Burge, Christopher B, Graveley, Brenton R, Yeo, Gene W, Lécuyer, Eric
Publicado 2022

Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA

por Yang, Ei-Wen, Bahn, Jae Hoon, Hsiao, Esther Yun-Hua, Tan, Boon Xin, Sun, Yiwei, Fu, Ting, Zhou, Bo, Van Nostrand, Eric L., Pratt, Gabriel A., Freese, Peter, Wei, Xintao, Quinones-Valdez, Giovanni, Urban, Alexander E., Graveley, Brenton R., Burge, Christopher B., Yeo, Gene W., Xiao, Xinshu
Publicado 2019

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

por Van Nostrand, Eric L., Pratt, Gabriel A., Yee, Brian A., Wheeler, Emily C., Blue, Steven M., Mueller, Jasmine, Park, Samuel S., Garcia, Keri E., Gelboin-Burkhart, Chelsea, Nguyen, Thai B., Rabano, Ines, Stanton, Rebecca, Sundararaman, Balaji, Wang, Ruth, Fu, Xiang-Dong, Graveley, Brenton R., Yeo, Gene W.
Publicado 2020

Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death

por Arif, Waqar, Mathur, Bhoomika, Saikali, Michael F., Chembazhi, Ullas V., Toohill, Katelyn, Song, You Jin, Hao, Qinyu, Karimi, Saman, Blue, Steven M., Yee, Brian A., Van Nostrand, Eric L., Bangru, Sushant, Guzman, Grace, Yeo, Gene W., Prasanth, Kannanganattu V., Anakk, Sayeepriyadarshini, Cummins, Carolyn L., Kalsotra, Auinash
Publicado 2023

Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop

por Alexander, Roger P., Kitchen, Robert R, Tosar, Juan Pablo, Roth, Matthew, Mestdagh, Pieter, Max, Klaas E. A., Rozowsky, Joel, Kaczor-Urbanowicz, Karolina Elżbieta, Chang, Justin, Balaj, Leonora, Losic, Bojan, Van Nostrand, Eric L., LaPlante, Emily, Mateescu, Bogdan, White, Brian S., Yu, Rongshan, Milosavljevic, Aleksander, Stolovitzky, Gustavo, Spengler, Ryan M.
Publicado 2022

A protein-RNA interaction atlas of the ribosome biogenesis factor AATF

por Kaiser, Rainer W. J., Ignarski, Michael, Van Nostrand, Eric L., Frese, Christian K., Jain, Manaswita, Cukoski, Sadrija, Heinen, Heide, Schaechter, Melanie, Seufert, Lisa, Bunte, Konstantin, Frommolt, Peter, Keller, Patrick, Helm, Mark, Bohl, Katrin, Höhne, Martin, Schermer, Bernhard, Benzing, Thomas, Höpker, Katja, Dieterich, Christoph, Yeo, Gene W., Müller, Roman-Ulrich, Fabretti, Francesca
Publicado 2019

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

por Xiang, Joy S., Mueller, Jasmine R., Luo, En-Ching, Yee, Brian A., Schafer, Danielle, Schmok, Jonathan C., Tan, Frederick E., Rothamel, Katherine, McVicar, Rachael N., Kwong, Elizabeth M., Jones, Krysten L., Her, Hsuan-Lin, Chen, Chun-Yuan, Vu, Anthony Q., Jin, Wenhao, Park, Samuel S., Le, Phuong, Brannan, Kristopher W., Kofman, Eric R., Li, Yanhua, Tankka, Alexandra T., Dong, Kevin D., Song, Yan, Carlin, Aaron F., Van Nostrand, Eric L., Leibel, Sandra L., Yeo, Gene W.
Publicado 2022