Evaluation of critical data processing steps for reliable prediction of gene co-expression from large collections of RNA-seq data

por Vandenbon, Alexis
Publicado 2022

A universal tool for predicting differentially active features in single-cell and spatial genomics data

por Vandenbon, Alexis, Diez, Diego
Publicado 2023

Modeling tissue-specific structural patterns in human and mouse promoters

por Vandenbon, Alexis, Nakai, Kenta
Publicado 2010

A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data

por Vandenbon, Alexis, Diez, Diego
Publicado 2020

A Set of Structural Features Defines the Cis-Regulatory Modules of Antenna-Expressed Genes in Drosophila melanogaster

por López, Yosvany, Vandenbon, Alexis, Nakai, Kenta
Publicado 2014

Modeling the cis-regulatory modules of genes expressed in developmental stages of Drosophila melanogaster

por López, Yosvany, Vandenbon, Alexis, Nose, Akinao, Nakai, Kenta
Publicado 2017

A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription

por Vandenbon, Alexis, Kumagai, Yutaro, Akira, Shizuo, Standley, Daron M
Publicado 2012

Markov Chain-based Promoter Structure Modeling for Tissue-specific Expression Pattern Prediction

por Vandenbon, Alexis, Miyamoto, Yuki, Takimoto, Noriko, Kusakabe, Takehiro, Nakai, Kenta
Publicado 2008

Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs

por Kumagai, Yutaro, Vandenbon, Alexis, Teraguchi, Shunsuke, Akira, Shizuo, Suzuki, Yutaka
Publicado 2016

Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation

por Vandenbon, Alexis, Kumagai, Yutaro, Lin, Mengjie, Suzuki, Yutaka, Nakai, Kenta
Publicado 2018

Systems biology approaches to toll-like receptor signaling

por Vandenbon, Alexis, Teraguchi, Shunsuke, Akira, Shizuo, Takeda, Kiyoshi, Standley, Daron M
Publicado 2012

Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation

por Vandenbon, Alexis, Teraguchi, Shunsuke, Takeuchi, Osamu, Suzuki, Yutaka, Standley, Daron M
Publicado 2014

A Parzen window-based approach for the detection of locally enriched transcription factor binding sites

por Vandenbon, Alexis, Kumagai, Yutaro, Teraguchi, Shunsuke, Amada, Karlou Mar, Akira, Shizuo, Standley, Daron M
Publicado 2013

A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response

por Ikebuchi, Ryoyo, Teraguchi, Shunsuke, Vandenbon, Alexis, Honda, Tetsuya, Shand, Francis H. W., Nakanishi, Yasutaka, Watanabe, Takeshi, Tomura, Michio
Publicado 2016

Mapping circulating serum miRNAs to their immune-related target mRNAs

por Nosirov, Bakhtiyor, Billaud, Joël, Vandenbon, Alexis, Diez, Diego, Wijaya, Edward, Ishii, Ken J, Teraguchi, Shunsuke, Standley, Daron M
Publicado 2017

Murine breast cancers disorganize the liver transcriptome in a zonated manner

por Vandenbon, Alexis, Mizuno, Rin, Konishi, Riyo, Onishi, Masaya, Masuda, Kyoko, Kobayashi, Yuka, Kawamoto, Hiroshi, Suzuki, Ayako, He, Chenfeng, Nakamura, Yuki, Kawaguchi, Kosuke, Toi, Masakazu, Shimizu, Masahito, Tanaka, Yasuhito, Suzuki, Yutaka, Kawaoka, Shinpei
Publicado 2023

The N(6)-methyladenosine methyltransferase METTL16 enables erythropoiesis through safeguarding genome integrity

por Yoshinaga, Masanori, Han, Kyuho, Morgens, David W., Horii, Takuro, Kobayashi, Ryosuke, Tsuruyama, Tatsuaki, Hia, Fabian, Yasukura, Shota, Kajiya, Asako, Cai, Ting, Cruz, Pedro H. C., Vandenbon, Alexis, Suzuki, Yutaka, Kawahara, Yukio, Hatada, Izuho, Bassik, Michael C., Takeuchi, Osamu
Publicado 2022